RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 SYT15Q9BQS2 421 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 UPF3AQ9H1J1 476 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 LY9Q9HBG7 655 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 SLCO1B3Q9NPD5 702 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 BCORL1Q5H9F3 1711 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 MYMKA6NI61 221 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 J3QRK9 145 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 BCL10O95999 233 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 BMP6P22004 513 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 PPM1FP49593 454 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 PDK1Q15118 436 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 PUM3Q15397 648 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 HLFQ16534 295 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 TMEM53Q6P2H8 277 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 RBM43Q6ZSC3 357 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 FAM178BQ8IXR5 827 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 PSMA8Q8TAA3 256 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 DDI1Q8WTU0 396 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 FBXL8Q96CD0 374 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 COQ3Q9NZJ6 369 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 A0A1W2PQ72 361 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 HMOX2P30519 316 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 TOB1P50616 345 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 PWP1Q13610 501 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 EFHC1Q5JVL4 640 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 ANGPTL8Q6UXH0 198 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 CLEC4FQ8N1N0 589 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 FBXL13Q8NEE6 735 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 MTMR8Q96EF0 704 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 OXNAD1Q96HP4 312 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 COX4I2Q96KJ9 171 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 OSBPL7Q9BZF2 842 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 LMCD1Q9NZU5 365 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 DIS3Q9Y2L1 958 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 POLR2MP0CAP2 368 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 CLK1P49759 484 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 CERKLQ49MI3 558 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 SGO1Q5FBB7 561 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 KLHDC10Q6PID8 442 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 SH3BP5LQ7L8J4 393 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 PDIK1LQ8N165 341 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 MRPS26Q9BYN8 205 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 NXF1Q9UBU9 619 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 LYNP07948 512 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 S100A5P33763 92 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 BMPR2Q13873 1038 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 MIR1-1HGQ9H1L0 117 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 TMEM247A6NEH6 219 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 ZNF200P98182 395 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 TMEM62Q0P6H9 643 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 FANCD2Q9BXW9 1451 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 PABPN1LA6NDY0 278 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 PHGDHO43175 533 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 SOX5P35711 763 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 CCT3P49368 545 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 COPAP53621 1224 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 RAB14P61106 215 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 EXOSC10Q01780 885 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 CCDC142Q17RM4 750 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 FAM182AQ5T1J6 154 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 POTEGQ6S5H5 508 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 SLF2Q8IX21 1173 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.28□□□□□ -1.561e-9■■■■■ 56.2
VPS13D-214ENST00000620676 RMND5BQ96G75 393 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 ABCC2Q92887 1545 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 LZTS3O60299 673 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 MT-CO1P00395 513 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 RPL21P46778 160 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 DNAJC24Q6P3W2 148 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 GALNT18Q6P9A2 607 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 ZNF564Q8TBZ8 553 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 KIFC3Q9BVG8 833 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 FAM187AA6NFU0 413 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 BTN3A3O00478 584 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 FESP07332 822 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 NEK3P51956 506 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 CAPRIN1Q14444 709 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 ZIK1Q3SY52 487 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 ZNF394Q53GI3 561 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 OR6Y1Q8NGX8 325 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 XPO7Q9UIA9 1087 aaKnown RBP5.28□□□□□ -1.56
VPS13D-214ENST00000620676 CTTNBP2Q8WZ74 1663 aa5.28□□□□□ -1.56
VPS13D-214ENST00000620676 TRIM49D1C9J1S8 452 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 PSMC2P35998 433 aaKnown RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ARHGDIAP52565 204 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 PGS1Q32NB8 556 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ZNF713Q8N859 430 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 DNAJC7Q99615 494 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 MYOCOSA0A1B0GUC4 107 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ZNF555Q8NEP9 628 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 FBXO25Q8TCJ0 367 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 LRRN4Q8WUT4 740 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SEMA4DQ92854 862 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 ZNF496Q96IT1 587 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-214ENST00000620676 VPS39Q96JC1 886 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 C11orf70Q9BRQ4 267 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SYBUQ9NX95 663 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 SEL1LQ9UBV2 794 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 GH1P01241 217 aa5.27□□□□□ -1.57
VPS13D-214ENST00000620676 USP17L8P0C7I0 530 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms