RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SF3B1O75533 1304 aaKnown RBP eCLIP21.24■□□□□ 0.99
UPF3A-211ENST00000618700 H3BNC9 293 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 SPTLC1O15269 473 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 TADA2AO75478 443 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 STAU1O95793 577 aaKnown RBP21.23■□□□□ 0.99
UPF3A-211ENST00000618700 AFPP02771 609 aaKnown RBP21.23■□□□□ 0.99
UPF3A-211ENST00000618700 KRT19P08727 400 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 PAX3P23760 479 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 PNPLA4P41247 253 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 TAF6P49848 677 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 LILRA4P59901 499 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 NCOA4Q13772 614 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 KRT31Q15323 416 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 MIIPQ5JXC2 388 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 TAS1R2Q8TE23 839 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 ZNF560Q96MR9 790 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 XYLT2Q9H1B5 865 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 LIMA1Q9UHB6 759 aaKnown RBP21.23■□□□□ 0.99
UPF3A-211ENST00000618700 COQ4Q9Y3A0 265 aa21.23■□□□□ 0.99
UPF3A-211ENST00000618700 P4HA2O15460 535 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 N4BP1O75113 896 aaKnown RBP21.22■□□□□ 0.99
UPF3A-211ENST00000618700 PHACTR2O75167 634 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 HLA-DRAP01903 254 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 ATP1A3P13637 1013 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 BRCC3P46736 316 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 MYL7Q01449 175 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 UBE3AQ05086 875 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 IER5LQ5T953 404 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 DDX53Q86TM3 631 aaKnown RBP21.22■□□□□ 0.99
UPF3A-211ENST00000618700 CREBRFQ8IUR6 639 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 SPPL3Q8TCT6 385 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 SUSD3Q96L08 255 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 GPR62Q9BZJ7 368 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 STK39Q9UEW8 545 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 NUB1Q9Y5A7 615 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 CDH23Q9H251 3354 aa21.22■□□□□ 0.99
UPF3A-211ENST00000618700 ATICP31939 592 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 PIK3CAP42336 1068 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 MYL6P60660 151 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 KRT17Q04695 432 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 GPM6BQ13491 265 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 TRPC3Q13507 836 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 SV2CQ496J9 727 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 TIGD5Q53EQ6 642 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 Q7L0L9 218 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 APTXQ7Z2E3 356 aaKnown RBP21.21■□□□□ 0.99
UPF3A-211ENST00000618700 DEFB123Q8N688 67 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 GDPD5Q8WTR4 605 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 HPDLQ96IR7 371 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 ANP32EQ9BTT0 268 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 HERC2P3Q9BVR0 1158 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 VRTNQ9H8Y1 702 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 ALG13Q9NP73 1137 aaKnown RBP21.21■□□□□ 0.99
UPF3A-211ENST00000618700 TAB2Q9NYJ8 693 aa21.21■□□□□ 0.99
UPF3A-211ENST00000618700 LRRC10BA6NIK2 292 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 KPNA7A9QM74 516 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 M0QZQ0 153 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 GRM6O15303 877 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 TRAPPC3O43617 180 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 ASS1P00966 412 aaKnown RBP21.2■□□□□ 0.98
UPF3A-211ENST00000618700 SOD2P04179 222 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 PRKCSHP14314 528 aaPredicted RBP21.2■□□□□ 0.98
UPF3A-211ENST00000618700 DNAJB1P25685 340 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 ELAVL2Q12926 359 aaKnown RBP21.2■□□□□ 0.98
UPF3A-211ENST00000618700 VWA3BQ502W6 1294 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 FBXL13Q8NEE6 735 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 POF1BQ8WVV4 589 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 SEMA4DQ92854 862 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 NDST4Q9H3R1 872 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 GDAP2Q9NXN4 497 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 R3HCC1Q9Y3T6 440 aaKnown RBP21.2■□□□□ 0.98
UPF3A-211ENST00000618700 TSC2P49815 1807 aa21.2■□□□□ 0.98
UPF3A-211ENST00000618700 VWA8A3KMH1 1905 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 GOLGA6L19H0YKK7 550 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 I3L4J1 428 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 STK25O00506 426 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 LPXNO60711 386 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 MYO1EQ12965 1108 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 CAMK1Q14012 370 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 ZNF699Q32M78 642 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 ZNF697Q5TEC3 545 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 TAS1R1Q7RTX1 841 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 ANKRD20A12PQ8NF67 263 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 TAF4BQ92750 862 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 CHST7Q9NS84 486 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 RAB20Q9NX57 234 aa21.19■□□□□ 0.98
UPF3A-211ENST00000618700 SZT2Q5T011 3432 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 LRRN2O75325 713 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 CDK11BP21127 795 aaKnown RBP21.18■□□□□ 0.98
UPF3A-211ENST00000618700 FGFR3P22607 806 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 COPB1P53618 953 aaKnown RBP21.18■□□□□ 0.98
UPF3A-211ENST00000618700 TPM4P67936 248 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 SGSM1Q2NKQ1 1148 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 FAM171A1Q5VUB5 890 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.18■□□□□ 0.98
UPF3A-211ENST00000618700 LIMS2Q7Z4I7 341 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 GAS2L3Q86XJ1 694 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 VPS52Q8N1B4 723 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 RNF214Q8ND24 703 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 SENP8Q96LD8 212 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms