RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TRAPPC11Q7Z392 1133 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.56□□□□□ -0.08
LINC00540-202ENST00000616974 PABPC5Q96DU9 382 aaKnown RBP14.56□□□□□ -0.08
LINC00540-202ENST00000616974 SUSD3Q96L08 255 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 SENP8Q96LD8 212 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 NECAB3Q96P71 396 aaPredicted RBP14.56□□□□□ -0.08
LINC00540-202ENST00000616974 CGRRF1Q99675 332 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 RTP3Q9BQQ7 232 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 TGM5O43548 720 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 CALUO43852 315 aaPredicted RBP14.56□□□□□ -0.08
LINC00540-202ENST00000616974 NDUFV1P49821 464 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 COBLL1Q53SF7 1204 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 HSP90AA4PQ58FG1 418 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 CD302Q8IX05 232 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 EFHBQ8N7U6 833 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 SLC22A17Q8WUG5 538 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 HLA-CQ95604 372 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 CCDC34Q96HJ3 373 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 HOOK1Q9UJC3 728 aaKnown RBP14.56□□□□□ -0.08
LINC00540-202ENST00000616974 DERAQ9Y315 318 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 M0QZQ0 153 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 VNN2O95498 520 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 IL9P15248 144 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 CCNE1P24864 410 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 KLRC2P26717 231 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 OR1D2P34982 312 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 GCLMP48507 274 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 ARPP19P56211 112 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 SPOPLQ6IQ16 392 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.55□□□□□ -0.08
LINC00540-202ENST00000616974 FAM186BQ8IYM0 893 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 OR10T2Q8NGX3 314 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 PIK3R5Q8WYR1 880 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 MSLNLQ96KJ4 702 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 LPIN3Q9BQK8 851 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 PI4K2AQ9BTU6 479 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 MYO15AQ9UKN7 3530 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 PTPRDP23468 1912 aa14.55□□□□□ -0.08
LINC00540-202ENST00000616974 TBC1D4O60343 1298 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 MYL6P60660 151 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 WSCD1Q658N2 575 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.54□□□□□ -0.08
LINC00540-202ENST00000616974 WDR49Q8IV35 697 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 ZC3H3Q8IXZ2 948 aaKnown RBP14.54□□□□□ -0.08
LINC00540-202ENST00000616974 GOLGA5Q8TBA6 731 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 CRISPLD1Q9H336 500 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 RXFP1Q9HBX9 757 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 FBXL5Q9UKA1 691 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 L1RE1Q9UN81 338 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 USP34Q70CQ2 3546 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 WDR27A2RRH5 827 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 GRXCR2A6NFK2 248 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 KIAA0391O15091 583 aaKnown RBP14.54□□□□□ -0.08
LINC00540-202ENST00000616974 C4BPAP04003 597 aaKnown RBP14.54□□□□□ -0.08
LINC00540-202ENST00000616974 SP100P23497 879 aaPredicted RBP14.54□□□□□ -0.08
LINC00540-202ENST00000616974 SNRPFP62306 86 aaKnown RBP14.54□□□□□ -0.08
LINC00540-202ENST00000616974 MRPL58Q14197 206 aaKnown RBP14.54□□□□□ -0.08
LINC00540-202ENST00000616974 EDRF1Q3B7T1 1238 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 DSTYKQ6XUX3 929 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 SV2AQ7L0J3 742 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 OSTM1Q86WC4 334 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 TTC9BQ8N6N2 239 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 TMEM174Q8WUU8 243 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 FNBP1Q96RU3 617 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 XYLT2Q9H1B5 865 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 CGNQ9P2M7 1197 aaKnown RBP14.54□□□□□ -0.08
LINC00540-202ENST00000616974 THEGQ9P2T0 379 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 POLIQ9UNA4 740 aa14.54□□□□□ -0.08
LINC00540-202ENST00000616974 KPNA7A9QM74 516 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 NRG2O14511 850 aaPredicted RBP14.53□□□□□ -0.08
LINC00540-202ENST00000616974 TAF6P49848 677 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 CLDN10P78369 228 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 BFSP1Q12934 665 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 NFIL3Q16649 462 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 DUOXA2Q1HG44 320 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 CBWD6Q4V339 395 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 CBWD3Q5JTY5 395 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 CBWD5Q5RIA9 395 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 CAVIN1Q6NZI2 390 aaKnown RBP14.53□□□□□ -0.08
LINC00540-202ENST00000616974 TMC5Q6UXY8 1006 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 RBM43Q6ZSC3 357 aaKnown RBP14.53□□□□□ -0.08
LINC00540-202ENST00000616974 C11orf57Q6ZUT1 292 aaPredicted RBP14.53□□□□□ -0.08
LINC00540-202ENST00000616974 ANKRD36BP1Q96IX9 119 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 PGLYRP2Q96PD5 576 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 KIAA1586Q9HCI6 787 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 MAN1C1Q9NR34 630 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 MTRRQ9UBK8 725 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 SNX9Q9Y5X1 595 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 CYB561D2O14569 222 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 PSMA7O14818 248 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 ACAT1P24752 427 aaKnown RBP14.53□□□□□ -0.08
LINC00540-202ENST00000616974 RAP1GAPP47736 663 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 VAMP7P51809 220 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 POU5F1Q01860 360 aaKnown RBP14.53□□□□□ -0.08
LINC00540-202ENST00000616974 ROR1Q01973 937 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 SOWAHAQ2M3V2 549 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 LILRA6Q6PI73 481 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 LRRTM3Q86VH5 581 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 IRF2BP1Q8IU81 584 aa14.53□□□□□ -0.08
LINC00540-202ENST00000616974 STKLD1Q8NE28 680 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms