RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 PPEF2O14830 753 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 OGTO15294 1046 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 LAMTOR5O43504 91 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 TRAK2O60296 914 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 VIPR2P41587 438 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 MCM2P49736 904 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 CSTF1Q05048 431 aaKnown RBP19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 RAD54LQ92698 747 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 ELSPBP1Q96BH3 223 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 ASAH2Q9NR71 780 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 BLOC1S4Q9NUP1 217 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 NDRG2Q9UN36 371 aaKnown RBP19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 SLC27A5Q9Y2P5 690 aa19.11■□□□□ 0.65
SHKBP1-223ENST00000600552 XPOTO43592 962 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 DUSP4Q13115 394 aa19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 TEAD2Q15562 447 aa19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 ZC2HC1CQ53FD0 456 aaPredicted RBP19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 JADE1Q6IE81 842 aa19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 ZC3H14Q6PJT7 736 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 BEST2Q8NFU1 509 aa19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 TRMT61BQ9BVS5 477 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 AVENQ9NQS1 362 aaPredicted RBP19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 YIPF1Q9Y548 306 aa19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 VPS13AQ96RL7 3174 aa19.1■□□□□ 0.65
SHKBP1-223ENST00000600552 MYO15AQ9UKN7 3530 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 TISP43B9A030 160 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 ANKRD63C9JTQ0 380 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 M0QZQ0 153 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 TARSP26639 723 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 LRPAP1P30533 357 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 GDI1P31150 447 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 LONP1P36776 959 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 ACOT2P49753 483 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 ZBTB6Q15916 424 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 KYAT1Q16773 422 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 OVOS1Q6IE37 1185 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 ZNF852Q6ZMS4 543 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 DYMQ7RTS9 669 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 KIAA2013Q8IYS2 634 aa19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 DDX23Q9BUQ8 820 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 EP300Q09472 2414 aaPredicted RBP19.09■□□□□ 0.65
SHKBP1-223ENST00000600552 SLC26A4O43511 780 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 SOAT2O75908 522 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 BMP15O95972 392 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 NFICP08651 508 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 CYP3A5P20815 502 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 FCARP24071 287 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 ALDH1A3P47895 512 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 EPHB3P54753 998 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 CEBPZQ03701 1054 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 ADALQ6DHV7 355 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 ARMCX5Q6P1M9 558 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 SLC39A4Q6P5W5 647 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 TSSK4Q6SA08 328 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 BRAPQ7Z569 592 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 MAML2Q8IZL2 1156 aaPredicted RBP19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 DCLK2Q8N568 766 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 ZSCAN18Q8TBC5 510 aaPredicted RBP19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 FAM200AQ8TCP9 573 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 LARP4BQ92615 738 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 SMARCD2Q92925 531 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 EPSTI1Q96J88 318 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 SENP8Q96LD8 212 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 ASB16Q96NS5 453 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 TMEM209Q96SK2 561 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 CRISPLD1Q9H336 500 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 SEMA4AQ9H3S1 761 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 CLIC4Q9Y696 253 aa19.08■□□□□ 0.64
SHKBP1-223ENST00000600552 ANK1P16157 1881 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 A0A0B4J269 797 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 A0A1W2PRU2 124 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 OR6C75A6NL08 312 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 NCAM2O15394 837 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 MOSPD3O75425 235 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 OAZ2O95190 189 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 VNN2O95498 520 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 ID4P47928 161 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 TMEM132DQ14C87 1099 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 SPATA1Q5VX52 437 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 VITQ6UXI7 678 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 USP49Q70CQ1 688 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 YAF2Q8IY57 180 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 KRI1Q8N9T8 703 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 ATAD1Q8NBU5 361 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 SHKBP1Q8TBC3 707 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 IKZF4Q9H2S9 585 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 TBC1D7Q9P0N9 293 aa19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 MRPS17Q9Y2R5 130 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-223ENST00000600552 SPTLC1O15269 473 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 KINO60870 393 aaKnown RBP19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 ODC1P11926 461 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 DDIT3P35638 169 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 ZNF131P52739 623 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 LILRA4P59901 499 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 PLD1Q13393 1074 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 C9orf57Q5W0N0 161 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 TTC9BQ8N6N2 239 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 NOC3LQ8WTT2 800 aaKnown RBP19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 ATRIPQ8WXE1 791 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 NELL2Q99435 816 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms