RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 MTMR3Q13615 1198 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 CUL4BQ13620 913 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 ALCAMQ13740 583 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 SLC5A9Q2M3M2 681 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 UVSSAQ2YD98 709 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 CTXN3Q4LDR2 81 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 LIN9Q5TKA1 542 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 ELMSAN1Q6PJG2 1045 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 GET4Q7L5D6 327 aaPredicted RBP13.17□□□□□ -0.3
LIG1-217ENST00000599165 CCDC65Q8IXS2 484 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 BEST2Q8NFU1 509 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 ZNF507Q8TCN5 953 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 TMEM209Q96SK2 561 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 RTP3Q9BQQ7 232 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 FAM213AQ9BRX8 229 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 PIDD1Q9HB75 910 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 SERTAD1Q9UHV2 236 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 CFAP45Q9UL16 551 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 PCDHB13Q9Y5F0 798 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 COL4A3Q01955 1670 aa13.17□□□□□ -0.3
LIG1-217ENST00000599165 FAM237AA0A1B0GTK4 181 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 ANHXE9PGG2 379 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 NARSO43776 548 aaKnown RBP13.16□□□□□ -0.3
LIG1-217ENST00000599165 LAMP2P13473 410 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 TYMPP19971 482 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 FSHRP23945 695 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 GBP2P32456 591 aaPredicted RBP13.16□□□□□ -0.3
LIG1-217ENST00000599165 ARPP19P56211 112 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 ASIC1P78348 528 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 HTR4Q13639 388 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 POSTNQ15063 836 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 FAM26FQ5R3K3 315 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 ZNF280DQ6N043 979 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 RNF19BQ6ZMZ0 732 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 UNC13DQ70J99 1090 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 TCEAL8Q8IYN2 117 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 APPL2Q8NEU8 664 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 OR10T2Q8NGX3 314 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 SCFD1Q8WVM8 642 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 PBXIP1Q96AQ6 731 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 ACSF2Q96CM8 615 aaPredicted RBP13.16□□□□□ -0.3
LIG1-217ENST00000599165 SENP8Q96LD8 212 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 RPP25Q9BUL9 199 aaKnown RBP13.16□□□□□ -0.3
LIG1-217ENST00000599165 PCIF1Q9H4Z3 704 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 DPP3Q9NY33 737 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 KCNH3Q9ULD8 1083 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 EXOC7Q9UPT5 735 aa13.16□□□□□ -0.3
LIG1-217ENST00000599165 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.16□□□□□ -0.3
LIG1-217ENST00000599165 A0A1B0GVL5 298 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 H7C4K7 107 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 XPOTO43592 962 aaKnown RBP13.15□□□□□ -0.3
LIG1-217ENST00000599165 EXTL3O43909 919 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 CYP11A1P05108 521 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 PFKFB1P16118 471 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 CCR2P41597 374 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 AFMP43652 599 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 YWHAHQ04917 246 aaPredicted RBP13.15□□□□□ -0.3
LIG1-217ENST00000599165 TDGQ13569 410 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 PRSS36Q5K4E3 855 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 IER5LQ5T953 404 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 TPGS2Q68CL5 300 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 RTL10Q7L3V2 364 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 CBWD2Q8IUF1 395 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 UBALD2Q8IYN6 164 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 FBXL6Q8N531 539 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 TTC9BQ8N6N2 239 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 C1orf127Q8N9H9 656 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 FGF13Q92913 245 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 GZF1Q9H116 711 aaPredicted RBP13.15□□□□□ -0.3
LIG1-217ENST00000599165 TMEM206Q9H813 350 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 MAGEF1Q9HAY2 307 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 PDE11AQ9HCR9 933 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 CEP72Q9P209 647 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 AFF4Q9UHB7 1163 aaKnown RBP13.15□□□□□ -0.3
LIG1-217ENST00000599165 SIX4Q9UIU6 781 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 DUSP12Q9UNI6 340 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 ARIH1Q9Y4X5 557 aaPredicted RBP13.15□□□□□ -0.3
LIG1-217ENST00000599165 INSL5Q9Y5Q6 135 aa13.15□□□□□ -0.3
LIG1-217ENST00000599165 EIF3DO15371 548 aaKnown RBP eCLIP13.14□□□□□ -0.31
LIG1-217ENST00000599165 MOSPD3O75425 235 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 IL18RAPO95256 599 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 SLFN14P0C7P3 912 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 CMA1P23946 247 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 ADCY1Q08828 1119 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 BMT2Q1RMZ1 405 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 PARM1Q6UWI2 310 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 DSTYKQ6XUX3 929 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 NPAS3Q8IXF0 933 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 SYCP3Q8IZU3 236 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 GPD1LQ8N335 351 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 SLC44A3Q8N4M1 653 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 KIAA0895Q8NCT3 520 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 FGF14Q92915 247 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 PAGE5Q96GU1 130 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 PGLYRP2Q96PD5 576 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 LRRC3Q9BY71 257 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 LRRC27Q9C0I9 530 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 DNAJC25Q9H1X3 360 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 GOLPH3LQ9H4A5 285 aa13.14□□□□□ -0.31
LIG1-217ENST00000599165 CYP4F11Q9HBI6 524 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms