RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 PFKFB1P16118 471 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 GARTP22102 1010 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 CASP1P29466 404 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 ID4P47928 161 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 EHHADHQ08426 723 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 SLC8B1Q6J4K2 584 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 ZNF280DQ6N043 979 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 BRSK2Q8IWQ3 736 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 CEP57L1Q8IYX8 460 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 APPL2Q8NEU8 664 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 CBWD1Q9BRT8 395 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 PRKD2Q9BZL6 878 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 BLZF1Q9H2G9 400 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 WDR6Q9NNW5 1121 aaKnown RBP16.38■□□□□ 0.21
TRIM28-205ENST00000595028 PCDHB8Q9UN66 801 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 UBE4BO95155 1302 aa16.38■□□□□ 0.21
TRIM28-205ENST00000595028 H7C4K7 107 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 M0QZQ0 153 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 TBC1D4O60343 1298 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 IL18RAPO95256 599 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 HNRNPA1P09651 372 aaKnown RBP eCLIP16.37■□□□□ 0.21
TRIM28-205ENST00000595028 SLFN14P0C7P3 912 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 CMA1P23946 247 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 HOXA9P31269 272 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 AFMP43652 599 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 ROR1Q01973 937 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 MRPL58Q14197 206 aaKnown RBP16.37■□□□□ 0.21
TRIM28-205ENST00000595028 PTPN21Q16825 1174 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 C9orf57Q5W0N0 161 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 EPM2AIP1Q7L775 607 aaPredicted RBP16.37■□□□□ 0.21
TRIM28-205ENST00000595028 OTOP3Q7RTS5 596 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 EFCAB13Q8IY85 973 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 ZDHHC14Q8IZN3 488 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 ZSWIM2Q8NEG5 633 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 SLC7A14Q8TBB6 771 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 SAAL1Q96ER3 474 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 FAM213AQ9BRX8 229 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 SCAND2PQ9GZW5 306 aaPredicted RBP16.37■□□□□ 0.21
TRIM28-205ENST00000595028 PIDD1Q9HB75 910 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 SERTAD1Q9UHV2 236 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 FBXL5Q9UKA1 691 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 HPSEQ9Y251 543 aa16.37■□□□□ 0.21
TRIM28-205ENST00000595028 A0A1B0GVL5 298 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 GALR2O43603 387 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-205ENST00000595028 EXTL3O43909 919 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 LDHAP00338 332 aaKnown RBP16.36■□□□□ 0.21
TRIM28-205ENST00000595028 POU2F2P09086 479 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 HOXD13P35453 343 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 WNT7BP56706 349 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 CUL4BQ13620 913 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 CTXN3Q4LDR2 81 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 PPM1LQ5SGD2 360 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 ARMCX5Q6P1M9 558 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 NT5DC4Q86YG4 428 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 GRAMD1CQ8IYS0 662 aa16.36■□□□□ 0.21
TRIM28-205ENST00000595028 ACSF2Q96CM8 615 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-205ENST00000595028 RBAKQ9NYW8 714 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-205ENST00000595028 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-205ENST00000595028 FAM237AA0A1B0GTK4 181 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 PVALEFA0A1B0GWK0 134 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 ANO9A1A5B4 782 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 WDR27A2RRH5 827 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 KIAA0391O15091 583 aaKnown RBP16.35■□□□□ 0.21
TRIM28-205ENST00000595028 PDGFBP01127 241 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-205ENST00000595028 PAX3P23760 479 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 NBL1P41271 181 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 NUBP1P53384 320 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 GPD1LQ8N335 351 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 PLCD3Q8N3E9 789 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 ZNF461Q8TAF7 563 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 ZNF507Q8TCN5 953 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 USP25Q9UHP3 1055 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 EPG5Q9HCE0 2579 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 NOTCH4Q99466 2003 aa16.35■□□□□ 0.21
TRIM28-205ENST00000595028 A0A1W2PQ27 194 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 A0A1W2PQ64 194 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 A0A1W2PQD8 194 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 GOLGA8IPA6NC78 632 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 GOLGA8JA6NMD2 632 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 PIRO00625 290 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 SPTLC1O15269 473 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 CCL16O15467 120 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 N4BP1O75113 896 aaKnown RBP16.34■□□□□ 0.21
TRIM28-205ENST00000595028 XYLBO75191 536 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 ABLIM3O94929 683 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 TYMPP19971 482 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 ARPP19P56211 112 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 LILRA4P59901 499 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 YWHAHQ04917 246 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-205ENST00000595028 BMT2Q1RMZ1 405 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 UVSSAQ2YD98 709 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 DSTYKQ6XUX3 929 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 RTL10Q7L3V2 364 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 SCFD1Q8WVM8 642 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 PAGE5Q96GU1 130 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 PCIF1Q9H4Z3 704 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 DPP3Q9NY33 737 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 SORCS3Q9UPU3 1222 aa16.34■□□□□ 0.21
TRIM28-205ENST00000595028 TIMM13Q9Y5L4 95 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-205ENST00000595028 KLRC4O43908 158 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms