RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 EBAG9O00559 213 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 SYF2O95926 243 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 ADH1CP00326 375 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 ZFYP08048 801 aaPredicted RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 UQCRFS1P1P0C7P4 283 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 FTH1P19P0C7X4 201 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 EPB41P11171 864 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 GNAT1P11488 350 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 BMP3P12645 472 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 EDNRBP24530 442 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 ELAVL4P26378 380 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 TNFRSF8P28908 595 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 ARHGAP25P42331 645 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 CLCN4P51793 760 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 STAT2P52630 851 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 CCT2P78371 535 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 IRX4P78413 519 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 GUCY1B3Q02153 619 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 APBA1Q02410 837 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 TMEM62Q0P6H9 643 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 DRP2Q13474 957 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 PNOCQ13519 176 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 STIM1Q13586 685 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 LAMC2Q13753 1193 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 NR1I3Q14994 352 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 PWP2Q15269 919 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 IMMTQ16891 758 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 TMEM266Q2M3C6 531 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 PLK5Q496M5 336 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 FILIP1LQ4L180 1135 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 ZNF569Q5MCW4 686 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 CCDC70Q6NSX1 233 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 KCNV1Q6PIU1 500 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 FOXR1Q6PIV2 292 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 CPLX2Q6PUV4 134 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 CYP26C1Q6V0L0 522 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 RAD9BQ6WBX8 426 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 RNF207Q6ZRF8 634 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 Q6ZS52 159 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 LRRC55Q6ZSA7 311 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 MICALCLQ6ZW33 695 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 MTSS1LQ765P7 747 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 B4GALNT4Q76KP1 1039 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 TRAPPC11Q7Z392 1133 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 ZNF572Q7Z3I7 529 aaPredicted RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 YTHDF3Q7Z739 585 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 RALYLQ86SE5 291 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 RSPH3Q86UC2 560 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 CERS3Q8IU89 383 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 TMTC1Q8IUR5 882 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 FAM177A1Q8N128 213 aaPredicted RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 STK11IPQ8N1F8 1099 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 CMTR1Q8N1G2 835 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 SLC39A11Q8N1S5 342 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 LRRC43Q8N309 656 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 SPEM1Q8N4L4 309 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 PDILTQ8N807 584 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 IGSF22Q8N9C0 903 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 SPATA20Q8TB22 786 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 FAM174AQ8TBP5 190 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 LMBR1Q8WVP7 490 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 ADAMTS14Q8WXS8 1223 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 FAM3CQ92520 227 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 TMEM169Q96HH4 297 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 CABS1Q96KC9 395 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 SEC62Q99442 399 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 MAP3K14Q99558 947 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 C16orf70Q9BSU1 422 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 CRACR2AQ9BSW2 395 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 DESI2Q9BSY9 194 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 EMILIN2Q9BXX0 1053 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 LRRC2Q9BYS8 371 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 FAM117AQ9C073 453 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 ADAMTS10Q9H324 1103 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 TUT1Q9H6E5 874 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 NCOA5Q9HCD5 579 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 RBM12Q9NTZ6 932 aaKnown RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 PAG1Q9NWQ8 432 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 DKK4Q9UBT3 224 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 PADI3Q9ULW8 664 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 KIAA1217Q5T5P2 1943 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 FRMPD4Q14CM0 1322 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 MAGEB6P1A0A0J9YX57 407 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 KLF18A0A0U1RQI7 1052 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 BCLAF3A2AJT9 711 aaKnown RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 DENND3A2RUS2 1198 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 BLACEA4D250 179 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 GOLGA6CA6NDK9 693 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 GOLGA6BA6NDN3 693 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 B4DLN1 442 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 MAN2B1O00754 1011 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 CPLX1O14810 134 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 DCLK1O15075 740 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 MEFVO15553 781 aaPredicted RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 RRP8O43159 456 aaKnown RBP4.52□□□□□ -1.69
LIG3-211ENST00000588713 PRC1O43663 620 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 OPA1O60313 960 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 KIAA0754O94854 1291 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 GYPCP04921 128 aa4.52□□□□□ -1.69
LIG3-211ENST00000588713 RHOXF2BP0C7M4 288 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms