RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 YWHAHQ04917 246 aaPredicted RBP16.07■□□□□ 0.16
SS18-212ENST00000579061 CUL4BQ13620 913 aa16.07■□□□□ 0.16
SS18-212ENST00000579061 DSTYKQ6XUX3 929 aa16.07■□□□□ 0.16
SS18-212ENST00000579061 EFCAB13Q8IY85 973 aa16.07■□□□□ 0.16
SS18-212ENST00000579061 GPD1LQ8N335 351 aa16.07■□□□□ 0.16
SS18-212ENST00000579061 GLIS3Q8NEA6 775 aa16.07■□□□□ 0.16
SS18-212ENST00000579061 HPS3Q969F9 1004 aa16.07■□□□□ 0.16
SS18-212ENST00000579061 CBWD1Q9BRT8 395 aa16.07■□□□□ 0.16
SS18-212ENST00000579061 BLZF1Q9H2G9 400 aa16.07■□□□□ 0.16
SS18-212ENST00000579061 DPP3Q9NY33 737 aa16.07■□□□□ 0.16
SS18-212ENST00000579061 SORCS3Q9UPU3 1222 aa16.07■□□□□ 0.16
SS18-212ENST00000579061 NOTCH4Q99466 2003 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 FAM86C2PA6NEL3 165 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 PPEF2O14830 753 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 ELF1P32519 619 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 HOXD13P35453 343 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 SIGLEC14Q08ET2 396 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 SURF1Q15526 300 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 BMT2Q1RMZ1 405 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 TRIM67Q6ZTA4 783 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 BMP8AQ7Z5Y6 402 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 USP37Q86T82 979 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 TCEAL8Q8IYN2 117 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 UBALD2Q8IYN6 164 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 TMEM130Q8N3G9 435 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 ZSWIM2Q8NEG5 633 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 SLC7A14Q8TBB6 771 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 CACTINQ8WUQ7 758 aaKnown RBP16.06■□□□□ 0.16
SS18-212ENST00000579061 SAAL1Q96ER3 474 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 PAGE5Q96GU1 130 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 SENP8Q96LD8 212 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 KIAA1586Q9HCI6 787 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 RBAKQ9NYW8 714 aaPredicted RBP16.06■□□□□ 0.16
SS18-212ENST00000579061 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.06■□□□□ 0.16
SS18-212ENST00000579061 CGNQ9P2M7 1197 aaKnown RBP16.06■□□□□ 0.16
SS18-212ENST00000579061 EPS15L1Q9UBC2 864 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 LIMD1Q9UGP4 676 aa16.06■□□□□ 0.16
SS18-212ENST00000579061 ZFP37Q9Y6Q3 630 aaPredicted RBP16.06■□□□□ 0.16
SS18-212ENST00000579061 TSC2P49815 1807 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 OR6C75A6NL08 312 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 KLRC4O43908 158 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 CYP11A1P05108 521 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 ODC1P11926 461 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 COL9A1P20849 921 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 CASP1P29466 404 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 SYKP43405 635 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 PSMD2Q13200 908 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 SCFD1Q8WVM8 642 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 CHAMP1Q96JM3 812 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 ZNF560Q96MR9 790 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 PCIF1Q9H4Z3 704 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 AFF4Q9UHB7 1163 aaKnown RBP16.05■□□□□ 0.16
SS18-212ENST00000579061 DSEQ9UL01 958 aa16.05■□□□□ 0.16
SS18-212ENST00000579061 GOLGA8IPA6NC78 632 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 ZNF233A6NK53 670 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 GOLGA8JA6NMD2 632 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 SPTLC1O15269 473 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 CCL16O15467 120 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 TGFB1I1O43294 461 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 N4BP1O75113 896 aaKnown RBP16.04■□□□□ 0.16
SS18-212ENST00000579061 GBP2P32456 591 aaPredicted RBP16.04■□□□□ 0.16
SS18-212ENST00000579061 PNPLA4P41247 253 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 TAF6P49848 677 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 MTMR3Q13615 1198 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 MYBPC2Q14324 1141 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 OVOS1Q6IE37 1185 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 HS2ST1Q7LGA3 356 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 C12orf56Q8IXR9 622 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 GRAMD1CQ8IYS0 662 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 NXPE3Q969Y0 559 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 SLC39A2Q9NP94 309 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 HSPBP1Q9NZL4 362 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 IGSF9Q9P2J2 1179 aa16.04■□□□□ 0.16
SS18-212ENST00000579061 TIMM13Q9Y5L4 95 aaPredicted RBP16.04■□□□□ 0.16
SS18-212ENST00000579061 TMEM221A6NGB7 291 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 M0R296 226 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 PRRG1O14668 218 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 LRG1P02750 347 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 CPB1P15086 417 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 FSHRP23945 695 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 NDUFA8P51970 172 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 ARPP19P56211 112 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 WNT7BP56706 349 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 TFAMQ00059 246 aaKnown RBP16.03■□□□□ 0.16
SS18-212ENST00000579061 SV2CQ496J9 727 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 GRASPQ7Z6J2 395 aaPredicted RBP16.03■□□□□ 0.16
SS18-212ENST00000579061 FSIP1Q8NA03 581 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 MYADMQ96S97 322 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 CYP4F11Q9HBI6 524 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 AVENQ9NQS1 362 aaPredicted RBP16.03■□□□□ 0.16
SS18-212ENST00000579061 AGPAT3Q9NRZ7 376 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 EXOC1Q9NV70 894 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 ITGA11Q9UKX5 1188 aa16.03■□□□□ 0.16
SS18-212ENST00000579061 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.02■□□□□ 0.16
SS18-212ENST00000579061 ASGR2P07307 311 aa16.02■□□□□ 0.16
SS18-212ENST00000579061 LAMP2P13473 410 aa16.02■□□□□ 0.16
SS18-212ENST00000579061 GPR17Q13304 367 aa16.02■□□□□ 0.16
SS18-212ENST00000579061 KNOP1Q1ED39 458 aaKnown RBP16.02■□□□□ 0.16
SS18-212ENST00000579061 KMT5BQ4FZB7 885 aa16.02■□□□□ 0.16
SS18-212ENST00000579061 GET4Q7L5D6 327 aaPredicted RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms