RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 GDAP2Q9NXN4 497 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 PCDH10Q9P2E7 1040 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 R3HCC1Q9Y3T6 440 aaKnown RBP17.33■□□□□ 0.36
SS18-211ENST00000578954 PTPRSQ13332 1948 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 LRRC53A6NM62 1247 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 TMEM189-UBE2V1I3L0A0 370 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 PODXLO00592 558 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 B4GALT3O60512 393 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 DEKP35659 375 aaKnown RBP17.32■□□□□ 0.36
SS18-211ENST00000578954 TAF6P49848 677 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 GATMP50440 423 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 GOLGA8FQ08AF8 430 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 GOLGA8DPQ0D2H9 430 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 RAPGEF1Q13905 1077 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 DRAP1Q14919 205 aaPredicted RBP17.32■□□□□ 0.36
SS18-211ENST00000578954 E4F1Q66K89 784 aaPredicted RBP17.32■□□□□ 0.36
SS18-211ENST00000578954 LIMS2Q7Z4I7 341 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 FMNL3Q8IVF7 1028 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 DPF3Q92784 378 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 ELMO3Q96BJ8 720 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 SPAG5Q96R06 1193 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.32■□□□□ 0.36
SS18-211ENST00000578954 CYP3A43Q9HB55 503 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 AIPL1Q9NZN9 384 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 CNTN6Q9UQ52 1028 aa17.32■□□□□ 0.36
SS18-211ENST00000578954 CASTOR2A6NHX0 329 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 DDHD2O94830 711 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 PTMAP06454 111 aaKnown RBP17.31■□□□□ 0.36
SS18-211ENST00000578954 P4HA1P13674 534 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 ACO1P21399 889 aaKnown RBP17.31■□□□□ 0.36
SS18-211ENST00000578954 SOX5P35711 763 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 STAT1P42224 750 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 KCNJ6P48051 423 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 CLCNKBP51801 687 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 LILRA4P59901 499 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 CDK17Q00537 523 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 WDR72Q3MJ13 1102 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 SV2CQ496J9 727 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 RASIP1Q5U651 963 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 CD300LGQ6UXG3 332 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 OTOP2Q7RTS6 562 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 ZNF280BQ86YH2 543 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 LRRC8AQ8IWT6 810 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 FAM71AQ8IYT1 594 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 LRRC43Q8N309 656 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 ARID3AQ99856 593 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 TMEM175Q9BSA9 504 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.31■□□□□ 0.363e-16■■■■■ 317.3
SS18-211ENST00000578954 NR2E3Q9Y5X4 410 aa17.31■□□□□ 0.36
SS18-211ENST00000578954 TBKBP1A7MCY6 615 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 SPTLC1O15269 473 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 FAM163BP0C2L3 166 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 PRKCIP41743 596 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 ARHGAP44Q17R89 818 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 SFMBT2Q5VUG0 894 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 WDR59Q6PJI9 974 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 DCLRE1AQ6PJP8 1040 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 TMEM139Q8IV31 216 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 CMTR2Q8IYT2 770 aaKnown RBP17.3■□□□□ 0.36
SS18-211ENST00000578954 C3orf58Q8NDZ4 430 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 LBHD1Q9BQE6 289 aaPredicted RBP17.3■□□□□ 0.36
SS18-211ENST00000578954 PAAF1Q9BRP4 392 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 NRDE2Q9H7Z3 1164 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 POLIQ9UNA4 740 aa17.3■□□□□ 0.36
SS18-211ENST00000578954 KPNA7A9QM74 516 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 FOXN3O00409 490 aaPredicted RBP17.29■□□□□ 0.36
SS18-211ENST00000578954 FERP16591 822 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 ZNF132P52740 706 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 YWHAEP62258 255 aaKnown RBP17.29■□□□□ 0.36
SS18-211ENST00000578954 TNNC1P63316 161 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 RNASELQ05823 741 aaKnown RBP17.29■□□□□ 0.36
SS18-211ENST00000578954 INCA1Q0VD86 236 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 HS1BP3Q53T59 392 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 DPH6Q7L8W6 267 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 IRF2BP2Q7Z5L9 587 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 TTC39CQ8N584 583 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 CCDC112Q8NEF3 446 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 PHOSPHO2Q8TCD6 241 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 SLC9A7Q96T83 725 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 SDCBP2Q9H190 292 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 CACNG4Q9UBN1 327 aa17.29■□□□□ 0.36
SS18-211ENST00000578954 NXF1Q9UBU9 619 aaKnown RBP17.29■□□□□ 0.36
SS18-211ENST00000578954 TACC1O75410 805 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 UPP2O95045 317 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 GJB5O95377 273 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 HTRA4P83105 476 aaPredicted RBP17.28■□□□□ 0.36
SS18-211ENST00000578954 CCZ1BP86790 482 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 CCZ1P86791 482 aaPredicted RBP17.28■□□□□ 0.36
SS18-211ENST00000578954 HGSNATQ68CP4 663 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 TOP6BLQ8N6T0 577 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 SPATA18Q8TC71 538 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 FAM193BQ96PV7 902 aaPredicted RBP17.28■□□□□ 0.36
SS18-211ENST00000578954 KCNF1Q9H3M0 494 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 CWH43Q9H720 699 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 SMYD3Q9H7B4 428 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 CISHQ9NSE2 258 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 CXXC1Q9P0U4 656 aaPredicted RBP17.28■□□□□ 0.36
SS18-211ENST00000578954 DNAJB4Q9UDY4 337 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 SNX9Q9Y5X1 595 aa17.28■□□□□ 0.36
SS18-211ENST00000578954 ZBBXA8MT70 800 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms