RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 NFIL3Q16649 462 aa20.88■□□□□ 0.93
SS18-208ENST00000577751 COBLL1Q53SF7 1204 aa20.88■□□□□ 0.93
SS18-208ENST00000577751 DSTYKQ6XUX3 929 aa20.88■□□□□ 0.93
SS18-208ENST00000577751 CMASQ8NFW8 434 aaPredicted RBP20.88■□□□□ 0.93
SS18-208ENST00000577751 ERCC4Q92889 916 aaPredicted RBP20.88■□□□□ 0.93
SS18-208ENST00000577751 FBXW11Q9UKB1 542 aa20.88■□□□□ 0.93
SS18-208ENST00000577751 MAPK8IP1Q9UQF2 711 aa20.88■□□□□ 0.93
SS18-208ENST00000577751 CDY1Q9Y6F8 540 aa20.88■□□□□ 0.93
SS18-208ENST00000577751 H7C4K7 107 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 DLL1O00548 723 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 EXOC3O60645 756 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 PRPF40AO75400 957 aaKnown RBP20.87■□□□□ 0.93
SS18-208ENST00000577751 SPATA31D3P0C874 917 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 TYMPP19971 482 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 TAF6P49848 677 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 CBX2Q14781 532 aaPredicted RBP20.87■□□□□ 0.93
SS18-208ENST00000577751 RARS2Q5T160 578 aaKnown RBP20.87■□□□□ 0.93
SS18-208ENST00000577751 ZNF658Q5TYW1 1059 aaPredicted RBP20.87■□□□□ 0.93
SS18-208ENST00000577751 CES5AQ6NT32 575 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 SPATA31D4Q6ZUB0 917 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 WDR49Q8IV35 697 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 KREMEN2Q8NCW0 462 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 OR5B17Q8NGF7 314 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 SMARCE1Q969G3 411 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 FAM84AQ96KN4 292 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 SENP8Q96LD8 212 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 RHOBTB2Q9BYZ6 727 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 MTMR12Q9C0I1 747 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 GZF1Q9H116 711 aaPredicted RBP20.87■□□□□ 0.93
SS18-208ENST00000577751 ITGA11Q9UKX5 1188 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 C5orf42Q9H799 3197 aa20.87■□□□□ 0.93
SS18-208ENST00000577751 TSC2P49815 1807 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 MUC3AQ02505 3323 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 C19orf67A6NJJ6 358 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 CALUO43852 315 aaPredicted RBP20.86■□□□□ 0.93
SS18-208ENST00000577751 NR3C1P04150 777 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 ITGB3P05106 788 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 TMEM191BP0C7N4 346 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 POLR2BP30876 1174 aaKnown RBP20.86■□□□□ 0.93
SS18-208ENST00000577751 PNPLA4P41247 253 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 YWHAHQ04917 246 aaPredicted RBP20.86■□□□□ 0.93
SS18-208ENST00000577751 ZP2Q05996 745 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 DUOXA2Q1HG44 320 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 ZCWPW2Q504Y3 356 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 SCARA3Q6AZY7 606 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 ELMSAN1Q6PJG2 1045 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 C15orf39Q6ZRI6 1047 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 GPR149Q86SP6 731 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 ADHFE1Q8IWW8 467 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 SMYD4Q8IYR2 804 aaPredicted RBP20.86■□□□□ 0.93
SS18-208ENST00000577751 LRRC52Q8N7C0 313 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 FEZF2Q8TBJ5 459 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 ANKRD36BP1Q96IX9 119 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 ZNF560Q96MR9 790 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 SIX4Q9UIU6 781 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 CDH22Q9UJ99 828 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 FBXL5Q9UKA1 691 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 TIMM13Q9Y5L4 95 aaPredicted RBP20.86■□□□□ 0.93
SS18-208ENST00000577751 C2orf16Q68DN1 1984 aa20.86■□□□□ 0.93
SS18-208ENST00000577751 KPNA7A9QM74 516 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 ABLIM3O94929 683 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 CYP11A1P05108 521 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 PRCPP42785 496 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 ROR1Q01973 937 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 CTXN3Q4LDR2 81 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 LMBRD2Q68DH5 695 aaPredicted RBP20.85■□□□□ 0.93
SS18-208ENST00000577751 ZNF280DQ6N043 979 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 TMC5Q6UXY8 1006 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 CYP26C1Q6V0L0 522 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 CSGALNACT2Q8N6G5 542 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 ZNF461Q8TAF7 563 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 PLEKHO2Q8TD55 490 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 NECTIN4Q96NY8 510 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 CGRRF1Q99675 332 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 PHF7Q9BWX1 381 aaPredicted RBP20.85■□□□□ 0.93
SS18-208ENST00000577751 OXCT2Q9BYC2 517 aaPredicted RBP20.85■□□□□ 0.93
SS18-208ENST00000577751 GTPBP4Q9BZE4 634 aaKnown RBP20.85■□□□□ 0.93
SS18-208ENST00000577751 CD320Q9NPF0 282 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 ZDHHC7Q9NXF8 308 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 AGAP1Q9UPQ3 857 aa20.85■□□□□ 0.93
SS18-208ENST00000577751 CCDC195A0A1B0GUA6 201 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 ARHGEF37A1IGU5 675 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 WDR27A2RRH5 827 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 TULP1O00294 542 aaPredicted RBP20.84■□□□□ 0.93
SS18-208ENST00000577751 RFPL2O75678 378 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 ZMYND10O75800 440 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 DLATP10515 647 aaKnown RBP20.84■□□□□ 0.93
SS18-208ENST00000577751 ODC1P11926 461 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 MTHFRP42898 656 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 CASP4P49662 377 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 CLDN10P78369 228 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 RBP5P82980 135 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 SV2CQ496J9 727 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 ATAT1Q5SQI0 421 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 PARD3BQ8TEW8 1205 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 ZNF516Q92618 1163 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 CCDC127Q96BQ5 260 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 RIPOR3Q96MK2 946 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 FNBP1Q96RU3 617 aa20.84■□□□□ 0.93
SS18-208ENST00000577751 POP1Q99575 1024 aaKnown RBP20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms