RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 MEIS3P2A8K0S8 358 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 TMEM189-UBE2V1I3L0A0 370 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 EVI5O60447 810 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 LRRN2O75325 713 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 TACC1O75410 805 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 IPO7O95373 1038 aaKnown RBP16.36■□□□□ 0.21
SS18-206ENST00000577572 AMHP03971 560 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 ACO1P21399 889 aaKnown RBP16.36■□□□□ 0.21
SS18-206ENST00000577572 DSC1Q08554 894 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 INCA1Q0VD86 236 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 UPP1Q16831 310 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 CLLU1OSQ5K130 101 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 DCLRE1AQ6PJP8 1040 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 LIMS2Q7Z4I7 341 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 ZSCAN30Q86W11 494 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 TXLNBQ8N3L3 684 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 VWCEQ96DN2 955 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 CXCL16Q9H2A7 254 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 NHEJ1Q9H9Q4 299 aaPredicted RBP16.36■□□□□ 0.21
SS18-206ENST00000577572 RNF19AQ9NV58 838 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 AJAP1Q9UKB5 411 aaPredicted RBP16.36■□□□□ 0.21
SS18-206ENST00000577572 KIAA1257Q9ULG3 409 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 DNAH12Q6ZR08 3092 aa16.36■□□□□ 0.21
SS18-206ENST00000577572 KPNA7A9QM74 516 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 EIF3CLB5ME19 914 aaKnown RBP16.35■□□□□ 0.21
SS18-206ENST00000577572 CAPN15O75808 1086 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 LCA5LO95447 670 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 CSF2RAP15509 400 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 AARSP49588 968 aaKnown RBP eCLIP16.35■□□□□ 0.21
SS18-206ENST00000577572 ZNF132P52740 706 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 LILRA4P59901 499 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 PTK2Q05397 1052 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 SOX4Q06945 474 aaPredicted RBP16.35■□□□□ 0.21
SS18-206ENST00000577572 GOLGA8FQ08AF8 430 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 GOLGA8DPQ0D2H9 430 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 BMS1Q14692 1282 aaKnown RBP16.35■□□□□ 0.21
SS18-206ENST00000577572 C10orf76Q5T2E6 689 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 SPOPLQ6IQ16 392 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 PPP1R2P3Q6NXS1 205 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 UNC93AQ86WB7 457 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 TOP6BLQ8N6T0 577 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 TOP1MTQ969P6 601 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 FAM84AQ96KN4 292 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 EIF3CQ99613 913 aaKnown RBP16.35■□□□□ 0.21
SS18-206ENST00000577572 TMEM175Q9BSA9 504 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 DEF6Q9H4E7 631 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 LUC7LQ9NQ29 371 aaKnown RBP16.35■□□□□ 0.21
SS18-206ENST00000577572 CISHQ9NSE2 258 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 MIOSQ9NXC5 875 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 ARHGAP20Q9P2F6 1191 aa16.35■□□□□ 0.21
SS18-206ENST00000577572 EPN1Q9Y6I3 576 aaPredicted RBP16.35■□□□□ 0.21
SS18-206ENST00000577572 RBAK-RBAKDNI3L0D1 243 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 PODXLO00592 558 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 CLSTN1O94985 981 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 PAEPP09466 180 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 ITGB8P26012 769 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 GUCY2FP51841 1108 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 KRT83P78385 493 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 FPGSQ05932 587 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 ASTE1Q2TB18 679 aaPredicted RBP16.34■□□□□ 0.21
SS18-206ENST00000577572 E4F1Q66K89 784 aaPredicted RBP16.34■□□□□ 0.21
SS18-206ENST00000577572 PSRC1Q6PGN9 363 aaPredicted RBP16.34■□□□□ 0.21
SS18-206ENST00000577572 TMEM86AQ8N2M4 240 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 KIAA1524Q8TCG1 905 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 KAT5Q92993 513 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 ABHD8Q96I13 439 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 ZNF830Q96NB3 372 aaPredicted RBP16.34■□□□□ 0.21
SS18-206ENST00000577572 CASD1Q96PB1 797 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 FAM193BQ96PV7 902 aaPredicted RBP16.34■□□□□ 0.21
SS18-206ENST00000577572 CHP1Q99653 195 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 HAUS4Q9H6D7 363 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 NXF1Q9UBU9 619 aaKnown RBP16.34■□□□□ 0.21
SS18-206ENST00000577572 BARX2Q9UMQ3 279 aaPredicted RBP16.34■□□□□ 0.21
SS18-206ENST00000577572 PCDHB4Q9Y5E5 795 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 ATP8B3O60423 1300 aa16.34■□□□□ 0.21
SS18-206ENST00000577572 GOLGA6L9A6NEM1 432 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 ZSCAN12O43309 604 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 NDUFA10O95299 355 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 POMCP01189 267 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 KRT5P13647 590 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 CLCN1P35523 988 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 PDE6CP51160 858 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 SPA17Q15506 151 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 SLC18A3Q16572 532 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 TCTN1Q2MV58 587 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 TDRD12Q587J7 1177 aaKnown RBP16.33■□□□□ 0.2
SS18-206ENST00000577572 LRRC43Q8N309 656 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 APPL2Q8NEU8 664 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 SYT11Q9BT88 431 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 TBC1D13Q9NVG8 400 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 DSEQ9UL01 958 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 INPP5FQ9Y2H2 1132 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 SNX9Q9Y5X1 595 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 PDCD11Q14690 1871 aaKnown RBP16.33■□□□□ 0.2
SS18-206ENST00000577572 TTC3P53804 2025 aa16.33■□□□□ 0.2
SS18-206ENST00000577572 SOWAHDA6NJG2 315 aa16.32■□□□□ 0.2
SS18-206ENST00000577572 CYP26A1O43174 497 aa16.32■□□□□ 0.2
SS18-206ENST00000577572 TRAPPC3O43617 180 aa16.32■□□□□ 0.2
SS18-206ENST00000577572 AKR1B10O60218 316 aa16.32■□□□□ 0.2
SS18-206ENST00000577572 HUS1O60921 280 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms