RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 AARSP49588 968 aaKnown RBP eCLIP22.95■■□□□ 1.26
VPS53-216ENST00000574029 YWHAHQ04917 246 aaPredicted RBP22.95■■□□□ 1.26
VPS53-216ENST00000574029 ARSHQ5FYA8 562 aa22.95■■□□□ 1.26
VPS53-216ENST00000574029 ARL6IP4Q66PJ3 421 aaKnown RBP22.95■■□□□ 1.26
VPS53-216ENST00000574029 VITQ6UXI7 678 aa22.95■■□□□ 1.26
VPS53-216ENST00000574029 TICRRQ7Z2Z1 1910 aa22.95■■□□□ 1.26
VPS53-216ENST00000574029 MAP4K3Q8IVH8 894 aa22.95■■□□□ 1.26
VPS53-216ENST00000574029 ATRIPQ8WXE1 791 aa22.95■■□□□ 1.26
VPS53-216ENST00000574029 IRF7Q92985 503 aa22.95■■□□□ 1.26
VPS53-216ENST00000574029 TRPV4Q9HBA0 871 aa22.95■■□□□ 1.26
VPS53-216ENST00000574029 PRMT8Q9NR22 394 aaPredicted RBP22.95■■□□□ 1.26
VPS53-216ENST00000574029 ZSCAN32Q9NX65 697 aa22.95■■□□□ 1.26
VPS53-216ENST00000574029 EP300Q09472 2414 aaPredicted RBP22.94■■□□□ 1.26
VPS53-216ENST00000574029 NPHP3-ACAD11A0A0J9YXS1 232 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 LILRB5O75023 590 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 VNN2O95498 520 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 MYL4P12829 197 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 PSMC3P17980 439 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 TNFSF9P41273 254 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 MATR3P43243 847 aaKnown RBP eCLIP22.94■■□□□ 1.269e-10■■□□□ 13.9
VPS53-216ENST00000574029 CACNB1Q02641 598 aaPredicted RBP22.94■■□□□ 1.26
VPS53-216ENST00000574029 HAUS6Q7Z4H7 955 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 KIF12Q96FN5 646 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 CDK5RAP3Q96JB5 506 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 ZNF334Q9HCZ1 680 aaPredicted RBP22.94■■□□□ 1.26
VPS53-216ENST00000574029 ASAH2Q9NR71 780 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 UBQLN1Q9UMX0 589 aaKnown RBP22.94■■□□□ 1.26
VPS53-216ENST00000574029 YIPF1Q9Y548 306 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 OTOGLQ3ZCN5 2332 aa22.94■■□□□ 1.26
VPS53-216ENST00000574029 GJA1P17302 382 aa22.93■■□□□ 1.26
VPS53-216ENST00000574029 GDI1P31150 447 aa22.93■■□□□ 1.26
VPS53-216ENST00000574029 PPP2R3AQ06190 1150 aa22.93■■□□□ 1.26
VPS53-216ENST00000574029 KYAT1Q16773 422 aa22.93■■□□□ 1.26
VPS53-216ENST00000574029 C8orf34Q49A92 452 aa22.93■■□□□ 1.26
VPS53-216ENST00000574029 ZSCAN18Q8TBC5 510 aaPredicted RBP22.93■■□□□ 1.26
VPS53-216ENST00000574029 DEPDC1BQ8WUY9 529 aa22.93■■□□□ 1.26
VPS53-216ENST00000574029 BICD1Q96G01 975 aa22.93■■□□□ 1.26
VPS53-216ENST00000574029 TSPAN18Q96SJ8 248 aa22.93■■□□□ 1.26
VPS53-216ENST00000574029 LRRC3Q9BY71 257 aa22.93■■□□□ 1.26
VPS53-216ENST00000574029 ODF2LQ9ULJ1 636 aa22.93■■□□□ 1.26
VPS53-216ENST00000574029 TIMM13Q9Y5L4 95 aaPredicted RBP22.93■■□□□ 1.26
VPS53-216ENST00000574029 LACTBL1A8MY62 500 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 SLC26A4O43511 780 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 FAM189A1O60320 539 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 ADRB2P07550 413 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 VIPR2P41587 438 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 MTAPQ13126 283 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 PUM1Q14671 1186 aaKnown RBP eCLIP22.92■■□□□ 1.26
VPS53-216ENST00000574029 TEAD2Q15562 447 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 TSSK4Q6SA08 328 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 MAMSTRQ6ZN01 415 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 GPR88Q9GZN0 384 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 EPC1Q9H2F5 836 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 CHRDQ9H2X0 955 aa22.92■■□□□ 1.26
VPS53-216ENST00000574029 NDRG2Q9UN36 371 aaKnown RBP22.92■■□□□ 1.26
VPS53-216ENST00000574029 NCANO14594 1321 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 OR6C75A6NL08 312 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 XPOTO43592 962 aaKnown RBP22.91■■□□□ 1.26
VPS53-216ENST00000574029 PIGRP01833 764 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 OR4Q2P0C623 313 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 SCP2P22307 547 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 LIG4P49917 911 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 GPR17Q13304 367 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 PLD1Q13393 1074 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 RABEP1Q15276 862 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 ENOX2Q16206 610 aaKnown RBP22.91■■□□□ 1.26
VPS53-216ENST00000574029 DGLUCYQ7Z3D6 616 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 TMC8Q8IU68 726 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 MFSD6LQ8IWD5 586 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 SHKBP1Q8TBC3 707 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 AK8Q96MA6 479 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 PGLYRP2Q96PD5 576 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 REEP2Q9BRK0 252 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 IER2Q9BTL4 223 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 FAM126AQ9BYI3 521 aaPredicted RBP22.91■■□□□ 1.26
VPS53-216ENST00000574029 DNAJC25Q9H1X3 360 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 CRISPLD1Q9H336 500 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 DLL3Q9NYJ7 618 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 NCDNQ9UBB6 729 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 TBX20Q9UMR3 447 aa22.91■■□□□ 1.26
VPS53-216ENST00000574029 ARNTLO00327 626 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 OGTO15294 1046 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 TDGF1P13385 188 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 GUCY2FP51841 1108 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 DUSP4Q13115 394 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 DSTYKQ6XUX3 929 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 USP37Q86T82 979 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 FAM3CQ92520 227 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 E2F7Q96AV8 911 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 RPF1Q9H9Y2 349 aaKnown RBP22.9■■□□□ 1.26
VPS53-216ENST00000574029 PIAS3Q9Y6X2 628 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 DMXL1Q9Y485 3027 aa22.9■■□□□ 1.26
VPS53-216ENST00000574029 TSC2P49815 1807 aa22.89■■□□□ 1.26
VPS53-216ENST00000574029 ZNF263O14978 683 aa22.89■■□□□ 1.25
VPS53-216ENST00000574029 HNRNPDLO14979 420 aaKnown RBP22.89■■□□□ 1.25
VPS53-216ENST00000574029 TYMPP19971 482 aa22.89■■□□□ 1.25
VPS53-216ENST00000574029 GJB2P29033 226 aa22.89■■□□□ 1.25
VPS53-216ENST00000574029 ZNF131P52739 623 aa22.89■■□□□ 1.25
VPS53-216ENST00000574029 MLLT6P55198 1093 aaPredicted RBP22.89■■□□□ 1.25
VPS53-216ENST00000574029 MYBPC2Q14324 1141 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms