RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PKP1Q13835 747 aa8.8□□□□□ -1
VPS53-214ENST00000572607 L1TD1Q5T7N2 865 aaKnown RBP8.8□□□□□ -1
VPS53-214ENST00000572607 SMYD5Q6GMV2 418 aa8.8□□□□□ -1
VPS53-214ENST00000572607 SHC4Q6S5L8 630 aa8.8□□□□□ -1
VPS53-214ENST00000572607 PRSS55Q6UWB4 352 aaPredicted RBP8.8□□□□□ -1
VPS53-214ENST00000572607 C15orf39Q6ZRI6 1047 aa8.8□□□□□ -1
VPS53-214ENST00000572607 CCDC149Q6ZUS6 474 aa8.8□□□□□ -1
VPS53-214ENST00000572607 ANKS3Q6ZW76 656 aa8.8□□□□□ -1
VPS53-214ENST00000572607 GPR149Q86SP6 731 aa8.8□□□□□ -1
VPS53-214ENST00000572607 RNF135Q8IUD6 432 aa8.8□□□□□ -1
VPS53-214ENST00000572607 CEP57L1Q8IYX8 460 aa8.8□□□□□ -1
VPS53-214ENST00000572607 KREMEN2Q8NCW0 462 aa8.8□□□□□ -1
VPS53-214ENST00000572607 APPL2Q8NEU8 664 aa8.8□□□□□ -1
VPS53-214ENST00000572607 LNX1Q8TBB1 728 aaPredicted RBP8.8□□□□□ -1
VPS53-214ENST00000572607 STAMQ92783 540 aa8.8□□□□□ -1
VPS53-214ENST00000572607 C18orf25Q96B23 403 aaPredicted RBP8.8□□□□□ -1
VPS53-214ENST00000572607 ACSF2Q96CM8 615 aaPredicted RBP8.8□□□□□ -1
VPS53-214ENST00000572607 DNAJC19Q96DA6 116 aa8.8□□□□□ -1
VPS53-214ENST00000572607 SPATA32Q96LK8 384 aa8.8□□□□□ -1
VPS53-214ENST00000572607 FIZ1Q96SL8 496 aa8.8□□□□□ -1
VPS53-214ENST00000572607 AGO2Q9UKV8 859 aaKnown RBP8.8□□□□□ -1
VPS53-214ENST00000572607 PCDHA7Q9UN72 937 aa8.8□□□□□ -1
VPS53-214ENST00000572607 A0A087X0B3 334 aa8.79□□□□□ -1
VPS53-214ENST00000572607 CCDC195A0A1B0GUA6 201 aa8.79□□□□□ -1
VPS53-214ENST00000572607 TTC26A0AVF1 554 aa8.79□□□□□ -1
VPS53-214ENST00000572607 ARHGEF37A1IGU5 675 aa8.79□□□□□ -1
VPS53-214ENST00000572607 FRMD3A2A2Y4 597 aa8.79□□□□□ -1
VPS53-214ENST00000572607 LACTBL1A8MY62 500 aa8.79□□□□□ -1
VPS53-214ENST00000572607 POLR2DO15514 142 aaKnown RBP8.79□□□□□ -1
VPS53-214ENST00000572607 LDHAP00338 332 aaKnown RBP8.79□□□□□ -1
VPS53-214ENST00000572607 WEE2P0C1S8 567 aa8.79□□□□□ -1
VPS53-214ENST00000572607 SPATA31D3P0C874 917 aa8.79□□□□□ -1
VPS53-214ENST00000572607 MYBP10242 640 aa8.79□□□□□ -1
VPS53-214ENST00000572607 FGFR3P22607 806 aa8.79□□□□□ -1
VPS53-214ENST00000572607 SP100P23497 879 aaPredicted RBP8.79□□□□□ -1
VPS53-214ENST00000572607 PAX3P23760 479 aa8.79□□□□□ -1
VPS53-214ENST00000572607 LRPAP1P30533 357 aa8.79□□□□□ -1
VPS53-214ENST00000572607 TNFSF9P41273 254 aa8.79□□□□□ -1
VPS53-214ENST00000572607 BRCC3P46736 316 aa8.79□□□□□ -1
VPS53-214ENST00000572607 ACOT2P49753 483 aa8.79□□□□□ -1
VPS53-214ENST00000572607 POU5F1Q01860 360 aaKnown RBP8.79□□□□□ -1
VPS53-214ENST00000572607 SOX4Q06945 474 aaPredicted RBP8.79□□□□□ -1
VPS53-214ENST00000572607 SPAG1Q07617 926 aa8.79□□□□□ -1
VPS53-214ENST00000572607 ENOX2Q16206 610 aaKnown RBP8.79□□□□□ -1
VPS53-214ENST00000572607 PPM1LQ5SGD2 360 aa8.79□□□□□ -1
VPS53-214ENST00000572607 AXDND1Q5T1B0 1012 aaPredicted RBP8.79□□□□□ -1
VPS53-214ENST00000572607 RESP18Q5W5W9 173 aa8.79□□□□□ -1
VPS53-214ENST00000572607 ZNF280DQ6N043 979 aa8.79□□□□□ -1
VPS53-214ENST00000572607 DSTYKQ6XUX3 929 aa8.79□□□□□ -1
VPS53-214ENST00000572607 SPATA31D4Q6ZUB0 917 aa8.79□□□□□ -1
VPS53-214ENST00000572607 OTOP3Q7RTS5 596 aa8.79□□□□□ -1
VPS53-214ENST00000572607 BMP8AQ7Z5Y6 402 aa8.79□□□□□ -1
VPS53-214ENST00000572607 CMASQ8NFW8 434 aaPredicted RBP8.79□□□□□ -1
VPS53-214ENST00000572607 NOC3LQ8WTT2 800 aaKnown RBP8.79□□□□□ -1
VPS53-214ENST00000572607 SMG7Q92540 1137 aaKnown RBP8.79□□□□□ -1
VPS53-214ENST00000572607 CCDC34Q96HJ3 373 aa8.79□□□□□ -1
VPS53-214ENST00000572607 TRIM9Q9C026 710 aa8.79□□□□□ -1
VPS53-214ENST00000572607 HAPLN2Q9GZV7 340 aa8.79□□□□□ -1
VPS53-214ENST00000572607 POMKQ9H5K3 350 aa8.79□□□□□ -1
VPS53-214ENST00000572607 ASB7Q9H672 318 aa8.79□□□□□ -1
VPS53-214ENST00000572607 KBTBD4Q9NVX7 518 aa8.79□□□□□ -1
VPS53-214ENST00000572607 ZDHHC7Q9NXF8 308 aa8.79□□□□□ -1
VPS53-214ENST00000572607 MTRRQ9UBK8 725 aa8.79□□□□□ -1
VPS53-214ENST00000572607 TUBGCP4Q9UGJ1 667 aa8.79□□□□□ -1
VPS53-214ENST00000572607 CPSF3Q9UKF6 684 aaKnown RBP8.79□□□□□ -1
VPS53-214ENST00000572607 RCOR1Q9UKL0 485 aa8.79□□□□□ -1
VPS53-214ENST00000572607 KCNH3Q9ULD8 1083 aa8.79□□□□□ -1
VPS53-214ENST00000572607 DERAQ9Y315 318 aa8.79□□□□□ -1
VPS53-214ENST00000572607 BACE2Q9Y5Z0 518 aa8.79□□□□□ -1
VPS53-214ENST00000572607 CDY1Q9Y6F8 540 aa8.79□□□□□ -1
VPS53-214ENST00000572607 STYXL1Q9Y6J8 313 aa8.79□□□□□ -1
VPS53-214ENST00000572607 TDRD15B5MCY1 1934 aaKnown RBP8.78□□□□□ -1
VPS53-214ENST00000572607 FAM187AA6NFU0 413 aa8.78□□□□□ -1
VPS53-214ENST00000572607 ANKRD63C9JTQ0 380 aa8.78□□□□□ -1
VPS53-214ENST00000572607 I3L4J1 428 aa8.78□□□□□ -1
VPS53-214ENST00000572607 KIAA0391O15091 583 aaKnown RBP8.78□□□□□ -1
VPS53-214ENST00000572607 XYLBO75191 536 aa8.78□□□□□ -1
VPS53-214ENST00000572607 ZMYND10O75800 440 aa8.78□□□□□ -1
VPS53-214ENST00000572607 IL18RAPO95256 599 aa8.78□□□□□ -1
VPS53-214ENST00000572607 C8AP07357 584 aa8.78□□□□□ -1
VPS53-214ENST00000572607 GARTP22102 1010 aa8.78□□□□□ -1
VPS53-214ENST00000572607 TKTP29401 623 aaKnown RBP8.78□□□□□ -1
VPS53-214ENST00000572607 ELF1P32519 619 aa8.78□□□□□ -1
VPS53-214ENST00000572607 OR1D2P34982 312 aa8.78□□□□□ -1
VPS53-214ENST00000572607 RAB33AQ14088 237 aa8.78□□□□□ -1
VPS53-214ENST00000572607 TMEM132DQ14C87 1099 aa8.78□□□□□ -1
VPS53-214ENST00000572607 ZBTB41Q5SVQ8 909 aa8.78□□□□□ -1
VPS53-214ENST00000572607 KANK3Q6NY19 840 aa8.78□□□□□ -1
VPS53-214ENST00000572607 ARMCX5Q6P1M9 558 aa8.78□□□□□ -1
VPS53-214ENST00000572607 SLC39A4Q6P5W5 647 aa8.78□□□□□ -1
VPS53-214ENST00000572607 UNC13DQ70J99 1090 aa8.78□□□□□ -1
VPS53-214ENST00000572607 USP37Q86T82 979 aa8.78□□□□□ -1
VPS53-214ENST00000572607 NT5DC4Q86YG4 428 aa8.78□□□□□ -1
VPS53-214ENST00000572607 C3orf58Q8NDZ4 430 aa8.78□□□□□ -1
VPS53-214ENST00000572607 LEO1Q8WVC0 666 aaPredicted RBP8.78□□□□□ -1
VPS53-214ENST00000572607 EDAQ92838 391 aa8.78□□□□□ -1
VPS53-214ENST00000572607 SUSD3Q96L08 255 aa8.78□□□□□ -1
VPS53-214ENST00000572607 C7orf25Q9BPX7 421 aa8.78□□□□□ -1
VPS53-214ENST00000572607 CLSTN3Q9BQT9 956 aa8.78□□□□□ -1
VPS53-214ENST00000572607 OXCT2Q9BYC2 517 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms