RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 APOBEC3GQ9HC16 384 aaKnown RBP12.78□□□□□ -0.36
CDRT1-206ENST00000571263 TUBGCP4Q9UGJ1 667 aa12.78□□□□□ -0.36
CDRT1-206ENST00000571263 INPP5FQ9Y2H2 1132 aa12.78□□□□□ -0.36
CDRT1-206ENST00000571263 TMEM189-UBE2V1I3L0A0 370 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 FOXN3O00409 490 aaPredicted RBP12.77□□□□□ -0.37
CDRT1-206ENST00000571263 PODXLO00592 558 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 TRAPPC3O43617 180 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 HUS1O60921 280 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 TACC1O75410 805 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 DGKIO75912 1065 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 IPO7O95373 1038 aaKnown RBP12.77□□□□□ -0.37
CDRT1-206ENST00000571263 POMCP01189 267 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 LILRA4P59901 499 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 DSC1Q08554 894 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 KLHL30Q0D2K2 578 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 MAPK8IP2Q13387 824 aaPredicted RBP12.77□□□□□ -0.37
CDRT1-206ENST00000571263 UPP1Q16831 310 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 CLLU1OSQ5K130 101 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 PPP1R2P3Q6NXS1 205 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 IRF2BP2Q7Z5L9 587 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 ZNF677Q86XU0 584 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 TMEM86AQ8N2M4 240 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 TOP6BLQ8N6T0 577 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 PHOSPHO2Q8TCD6 241 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 BADQ92934 168 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 CCDC42Q96M95 316 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 KREMEN1Q96MU8 473 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 CASD1Q96PB1 797 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 COLEC11Q9BWP8 271 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 LUC7LQ9NQ29 371 aaKnown RBP12.77□□□□□ -0.37
CDRT1-206ENST00000571263 TBC1D13Q9NVG8 400 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 NXF1Q9UBU9 619 aaKnown RBP12.77□□□□□ -0.37
CDRT1-206ENST00000571263 DSEQ9UL01 958 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 PCDHB4Q9Y5E5 795 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 HTTP42858 3142 aa12.77□□□□□ -0.37
CDRT1-206ENST00000571263 CCP110O43303 1012 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 LRRN2O75325 713 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 PAEPP09466 180 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 FGFR1P11362 822 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 IBSPP21815 317 aaPredicted RBP12.76□□□□□ -0.37
CDRT1-206ENST00000571263 USP8P40818 1118 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 ASPAP45381 313 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 WDR5P61964 334 aaKnown RBP12.76□□□□□ -0.37
CDRT1-206ENST00000571263 APBA1Q02410 837 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 SOX4Q06945 474 aaPredicted RBP12.76□□□□□ -0.37
CDRT1-206ENST00000571263 ELAVL2Q12926 359 aaKnown RBP12.76□□□□□ -0.37
CDRT1-206ENST00000571263 SPOPLQ6IQ16 392 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 GJB7Q6PEY0 223 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.76□□□□□ -0.37
CDRT1-206ENST00000571263 UNC93AQ86WB7 457 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 COLGALT2Q8IYK4 626 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 TNS4Q8IZW8 715 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 APPL2Q8NEU8 664 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 VWCEQ96DN2 955 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 MMS19Q96T76 1030 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 SLC9A7Q96T83 725 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 CXCL16Q9H2A7 254 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 DEF6Q9H4E7 631 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 CISHQ9NSE2 258 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 RNF19AQ9NV58 838 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 STK39Q9UEW8 545 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 BARX2Q9UMQ3 279 aaPredicted RBP12.76□□□□□ -0.37
CDRT1-206ENST00000571263 SNX9Q9Y5X1 595 aa12.76□□□□□ -0.37
CDRT1-206ENST00000571263 PDCD11Q14690 1871 aaKnown RBP12.76□□□□□ -0.37
CDRT1-206ENST00000571263 TBKBP1A7MCY6 615 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 CAPN15O75808 1086 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 B3GAT3O94766 335 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 KRT5P13647 590 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 ACO1P21399 889 aaKnown RBP12.75□□□□□ -0.37
CDRT1-206ENST00000571263 LHX1P48742 406 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 AARSP49588 968 aaKnown RBP eCLIP12.75□□□□□ -0.37
CDRT1-206ENST00000571263 PDE6CP51160 858 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 CLCNKBP51801 687 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 GUCY2FP51841 1108 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 KRT83P78385 493 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 INCA1Q0VD86 236 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 BMS1Q14692 1282 aaKnown RBP12.75□□□□□ -0.37
CDRT1-206ENST00000571263 TCTN1Q2MV58 587 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 C10orf76Q5T2E6 689 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 CEP350Q5VT06 3117 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 WDR59Q6PJI9 974 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 DSTYKQ6XUX3 929 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 ZNF365Q70YC5 407 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 LIMS2Q7Z4I7 341 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 METTL23Q86XA0 190 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 CMTR2Q8IYT2 770 aaKnown RBP12.75□□□□□ -0.37
CDRT1-206ENST00000571263 UBR7Q8N806 425 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 HERVK_113Q902F9 699 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 GPR88Q9GZN0 384 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 NHEJ1Q9H9Q4 299 aaPredicted RBP12.75□□□□□ -0.37
CDRT1-206ENST00000571263 FAN1Q9Y2M0 1017 aa12.75□□□□□ -0.37
CDRT1-206ENST00000571263 CASTOR2A6NHX0 329 aa12.74□□□□□ -0.37
CDRT1-206ENST00000571263 CYB561D2O14569 222 aa12.74□□□□□ -0.37
CDRT1-206ENST00000571263 ZSCAN12O43309 604 aa12.74□□□□□ -0.37
CDRT1-206ENST00000571263 MED7O43513 233 aa12.74□□□□□ -0.37
CDRT1-206ENST00000571263 AKR1B10O60218 316 aa12.74□□□□□ -0.37
CDRT1-206ENST00000571263 TADA2AO75478 443 aa12.74□□□□□ -0.37
CDRT1-206ENST00000571263 KIF4AO95239 1232 aa12.74□□□□□ -0.37
CDRT1-206ENST00000571263 ACRP10323 421 aa12.74□□□□□ -0.37
CDRT1-206ENST00000571263 ODC1P11926 461 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms