RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 MRPL58Q14197 206 aaKnown RBP10.01□□□□□ -0.81
VPS35-211ENST00000569950 ADGRE1Q14246 886 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 GRIN2CQ14957 1233 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 MAN2A1Q16706 1144 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 DCAF17Q5H9S7 520 aaPredicted RBP10.01□□□□□ -0.81
VPS35-211ENST00000569950 KIAA0319Q5VV43 1072 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 KRT39Q6A163 491 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 FUT10Q6P4F1 479 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 RSPO2Q6UXX9 243 aaPredicted RBP10.01□□□□□ -0.81
VPS35-211ENST00000569950 DDX53Q86TM3 631 aaKnown RBP10.01□□□□□ -0.81
VPS35-211ENST00000569950 OSTM1Q86WC4 334 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 GDPD5Q8WTR4 605 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 KBTBD7Q8WVZ9 684 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 DDX27Q96GQ7 796 aaKnown RBP10.01□□□□□ -0.81
VPS35-211ENST00000569950 ANKRD36BP1Q96IX9 119 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 NAP1L5Q96NT1 182 aaPredicted RBP10.01□□□□□ -0.81
VPS35-211ENST00000569950 PI4K2AQ9BTU6 479 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 NAT10Q9H0A0 1025 aaKnown RBP10.01□□□□□ -0.81
VPS35-211ENST00000569950 ZBP1Q9H171 429 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 ZNF576Q9H609 170 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 SLC28A3Q9HAS3 691 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 GDAP2Q9NXN4 497 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 SPG21Q9NZD8 308 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 AJAP1Q9UKB5 411 aaPredicted RBP10.01□□□□□ -0.81
VPS35-211ENST00000569950 L1RE1Q9UN81 338 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 POLIQ9UNA4 740 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 NUB1Q9Y5A7 615 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 TMEM265A0A087WTH1 108 aa10□□□□□ -0.81
VPS35-211ENST00000569950 A0A1B0GTH6 734 aa10□□□□□ -0.81
VPS35-211ENST00000569950 TEX33O43247 280 aa10□□□□□ -0.81
VPS35-211ENST00000569950 HCRTO43612 131 aa10□□□□□ -0.81
VPS35-211ENST00000569950 B3GAT3O94766 335 aa10□□□□□ -0.81
VPS35-211ENST00000569950 FGFR1OPO95684 399 aaKnown RBP10□□□□□ -0.81
VPS35-211ENST00000569950 TNNC2P02585 160 aa10□□□□□ -0.81
VPS35-211ENST00000569950 AFPP02771 609 aaKnown RBP10□□□□□ -0.81
VPS35-211ENST00000569950 CYP11A1P05108 521 aa10□□□□□ -0.81
VPS35-211ENST00000569950 RB1P06400 928 aa10□□□□□ -0.81
VPS35-211ENST00000569950 TKTP29401 623 aaKnown RBP10□□□□□ -0.81
VPS35-211ENST00000569950 PBX1P40424 430 aa10□□□□□ -0.81
VPS35-211ENST00000569950 ASPAP45381 313 aa10□□□□□ -0.81
VPS35-211ENST00000569950 ALDH7A1P49419 539 aaKnown RBP10□□□□□ -0.81
VPS35-211ENST00000569950 RBP5P82980 135 aa10□□□□□ -0.81
VPS35-211ENST00000569950 PTPN21Q16825 1174 aa10□□□□□ -0.81
VPS35-211ENST00000569950 SOWAHAQ2M3V2 549 aa10□□□□□ -0.81
VPS35-211ENST00000569950 VWA3BQ502W6 1294 aa10□□□□□ -0.81
VPS35-211ENST00000569950 RNF214Q8ND24 703 aa10□□□□□ -0.81
VPS35-211ENST00000569950 FBXL13Q8NEE6 735 aa10□□□□□ -0.81
VPS35-211ENST00000569950 FBXO22Q8NEZ5 403 aa10□□□□□ -0.81
VPS35-211ENST00000569950 CACTINQ8WUQ7 758 aaKnown RBP10□□□□□ -0.81
VPS35-211ENST00000569950 AUTS2Q8WXX7 1259 aa10□□□□□ -0.81
VPS35-211ENST00000569950 TATDN2Q93075 761 aa10□□□□□ -0.81
VPS35-211ENST00000569950 HPDLQ96IR7 371 aa10□□□□□ -0.81
VPS35-211ENST00000569950 SENP8Q96LD8 212 aa10□□□□□ -0.81
VPS35-211ENST00000569950 SAMD11Q96NU1 681 aa10□□□□□ -0.81
VPS35-211ENST00000569950 ARID3AQ99856 593 aa10□□□□□ -0.81
VPS35-211ENST00000569950 HERC2P3Q9BVR0 1158 aa10□□□□□ -0.81
VPS35-211ENST00000569950 BCO2Q9BYV7 579 aa10□□□□□ -0.81
VPS35-211ENST00000569950 NDST4Q9H3R1 872 aa10□□□□□ -0.81
VPS35-211ENST00000569950 MMRN2Q9H8L6 949 aa10□□□□□ -0.81
VPS35-211ENST00000569950 RTN4Q9NQC3 1192 aaKnown RBP10□□□□□ -0.81
VPS35-211ENST00000569950 LZTS1Q9Y250 596 aa10□□□□□ -0.81
VPS35-211ENST00000569950 SIK3Q9Y2K2 1263 aa10□□□□□ -0.81
VPS35-211ENST00000569950 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10□□□□□ -0.81
VPS35-211ENST00000569950 GTF3C5Q9Y5Q8 519 aaPredicted RBP10□□□□□ -0.81
VPS35-211ENST00000569950 GREB1Q4ZG55 1949 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 GTPBP10A4D1E9 387 aaKnown RBP9.99□□□□□ -0.81
VPS35-211ENST00000569950 LGALS16A8MUM7 142 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 KPNA7A9QM74 516 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 GABRDO14764 452 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 EPHB6O15197 1021 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 P4HA2O15460 535 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 ADAM12O43184 909 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 XPOTO43592 962 aaKnown RBP9.99□□□□□ -0.81
VPS35-211ENST00000569950 NOL4O94818 638 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 VNN2O95498 520 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 SOD2P04179 222 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 SLC9A1P19634 815 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 POU3F3P20264 500 aaPredicted RBP9.99□□□□□ -0.81
VPS35-211ENST00000569950 PON1P27169 355 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 PPM1AP35813 382 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 TAF6P49848 677 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 KLK7P49862 253 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 MYL7Q01449 175 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 DSG1Q02413 1049 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 BIRC3Q13489 604 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 GPM6BQ13491 265 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 PTPN14Q15678 1187 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 CCDC142Q17RM4 750 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 TCERG1LQ5VWI1 586 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 PHLDB3Q6NSJ2 640 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 GPR153Q6NV75 609 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 Q7L0L9 218 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 ARHGEF19Q8IW93 802 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 FAM114A1Q8IWE2 563 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 LNX1Q8TBB1 728 aaPredicted RBP9.99□□□□□ -0.81
VPS35-211ENST00000569950 POF1BQ8WVV4 589 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 ARNTL2Q8WYA1 636 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 KAT5Q92993 513 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 KREMEN1Q96MU8 473 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 GUCD1Q96NT3 240 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms