RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 WNT7BP56706 349 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 GTF2BQ00403 316 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 SOX4Q06945 474 aaPredicted RBP15.13■□□□□ 0.01
CLN3-235ENST00000568497 COLGALT2Q8IYK4 626 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 CEP57L1Q8IYX8 460 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 KCTD17Q8N5Z5 321 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 SAAL1Q96ER3 474 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 ADPGKQ9BRR6 497 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 C17orf75Q9HAS0 396 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.13■□□□□ 0.01
CLN3-235ENST00000568497 CHMP5Q9NZZ3 219 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 DPP7Q9UHL4 492 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 FAM170BA6NMN3 283 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 I3L4J1 428 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 NRP1O14786 923 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 LILRB5O75023 590 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 ZNF202O95125 648 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 PAPLNO95428 1278 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 GLUD1P00367 558 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 URODP06132 367 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 ADH1AP07327 375 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 SLFN14P0C7P3 912 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 ADSSP30520 456 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 GPC5P78333 572 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 NOLC1Q14978 699 aaKnown RBP eCLIP15.12■□□□□ 0.01
CLN3-235ENST00000568497 MLF2Q15773 248 aaPredicted RBP15.12■□□□□ 0.01
CLN3-235ENST00000568497 DCAF4L1Q3SXM0 396 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 KMT5BQ4FZB7 885 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 CCDC65Q8IXS2 484 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 FAM193BQ96PV7 902 aaPredicted RBP15.12■□□□□ 0.01
CLN3-235ENST00000568497 RPS6KC1Q96S38 1066 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 STRA6Q9BX79 667 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 GIT1Q9Y2X7 761 aa15.12■□□□□ 0.01
CLN3-235ENST00000568497 MTF2Q9Y483 593 aaPredicted RBP15.12■□□□□ 0.01
CLN3-235ENST00000568497 ZMYM2Q9UBW7 1377 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 A0A1W2PQ27 194 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 A0A1W2PQ64 194 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 A0A1W2PQD8 194 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 ANHXE9PGG2 379 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 NR1I2O75469 434 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 MCF2P10911 925 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 GAP43P17677 238 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 CD72P21854 359 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 GRM5P41594 1212 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 PNOCQ13519 176 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 PCBP1Q15365 356 aaKnown RBP eCLIP15.11■□□□□ 0.01
CLN3-235ENST00000568497 SLC10A6Q3KNW5 377 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 ISM2Q6H9L7 571 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 KRBA2Q6ZNG9 492 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 PRR23BQ6ZRT6 265 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 MAP4K3Q8IVH8 894 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 SMYD4Q8IYR2 804 aaPredicted RBP15.11■□□□□ 0.01
CLN3-235ENST00000568497 NELL1Q92832 810 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 CBWD1Q9BRT8 395 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 MSTO1Q9BUK6 570 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 TUBGCP4Q9UGJ1 667 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 CIZ1Q9ULV3 898 aaPredicted RBP15.11■□□□□ 0.01
CLN3-235ENST00000568497 MAPK8IP1Q9UQF2 711 aa15.11■□□□□ 0.01
CLN3-235ENST00000568497 FAM237AA0A1B0GTK4 181 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 LACTBL1A8MY62 500 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 CLIC2O15247 247 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 CLDN3O15551 220 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 FAM189A1O60320 539 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 TOM1L1O75674 476 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 SPATA31D3P0C874 917 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 MAGEA9P43362 315 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 MCL1Q07820 350 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 DSC1Q08554 894 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 STK4Q13043 487 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 NAB2Q15742 525 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 ENOX2Q16206 610 aaKnown RBP15.1■□□□□ 0.01
CLN3-235ENST00000568497 FAM26FQ5R3K3 315 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 L1TD1Q5T7N2 865 aaKnown RBP15.1■□□□□ 0.01
CLN3-235ENST00000568497 SPATA31D4Q6ZUB0 917 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 UNC13DQ70J99 1090 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 FMR1NBQ8N0W7 255 aaPredicted RBP15.1■□□□□ 0.01
CLN3-235ENST00000568497 KIAA0895Q8NCT3 520 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 ACAP3Q96P50 834 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 RPP25Q9BUL9 199 aaKnown RBP15.1■□□□□ 0.01
CLN3-235ENST00000568497 DDX23Q9BUQ8 820 aaKnown RBP15.1■□□□□ 0.01
CLN3-235ENST00000568497 CCDC94Q9BW85 323 aaPredicted RBP15.1■□□□□ 0.01
CLN3-235ENST00000568497 OSBPL6Q9BZF3 934 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 LTB4R2Q9NPC1 389 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 FAN1Q9Y2M0 1017 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 CITO14578 2027 aa15.1■□□□□ 0.01
CLN3-235ENST00000568497 FASNP49327 2511 aaKnown RBP15.09■□□□□ 0.01
CLN3-235ENST00000568497 SMIM28A0A1B0GU29 152 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 GOLGA6L4A6NEF3 574 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 PPEF2O14830 753 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 TEX28O15482 410 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 KIF4AO95239 1232 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 CDR1P51861 262 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 PRKCQQ04759 706 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 SLC44A4Q53GD3 710 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 IL31Q6EBC2 164 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 LAIR1Q6GTX8 287 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 ZPBP2Q6X784 338 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 HACE1Q8IYU2 909 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 SYCP3Q8IZU3 236 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 C3orf58Q8NDZ4 430 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms