RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SLC8B1Q6J4K2 584 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 ARMCX5Q6P1M9 558 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 ELMSAN1Q6PJG2 1045 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 EFCAB13Q8IY85 973 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 FSIP1Q8NA03 581 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 DPP3Q9NY33 737 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 PCDHB8Q9UN66 801 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 TIMM13Q9Y5L4 95 aaPredicted RBP16.29■□□□□ 0.2
VPS39-210ENST00000568357 SPTBN4Q9H254 2564 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 C2CD4DB7Z1M9 353 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 TULP1O00294 542 aaPredicted RBP16.28■□□□□ 0.2
VPS39-210ENST00000568357 IL18RAPO95256 599 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 STK4Q13043 487 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 KMT5BQ4FZB7 885 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 SCARA3Q6AZY7 606 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 BRSK2Q8IWQ3 736 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 NELFCDQ8IXH7 590 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 GPD1LQ8N335 351 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 FBXL6Q8N531 539 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 NOC3LQ8WTT2 800 aaKnown RBP16.28■□□□□ 0.2
VPS39-210ENST00000568357 SMG7Q92540 1137 aaKnown RBP16.28■□□□□ 0.2
VPS39-210ENST00000568357 FAM84AQ96KN4 292 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 RHOBTB2Q9BYZ6 727 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 PRKD2Q9BZL6 878 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 ZDHHC7Q9NXF8 308 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 FBXL5Q9UKA1 691 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 NR2E1Q9Y466 385 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 DMDP11532 3685 aa16.28■□□□□ 0.2
VPS39-210ENST00000568357 ZFHX2Q9C0A1 2572 aaPredicted RBP16.27■□□□□ 0.2
VPS39-210ENST00000568357 H7C4K7 107 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 ABLIM3O94929 683 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 ARPP19P56211 112 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 ROR1Q01973 937 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 BMT2Q1RMZ1 405 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 CTXN3Q4LDR2 81 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 CYP26C1Q6V0L0 522 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 DSTYKQ6XUX3 929 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 KRBA2Q6ZNG9 492 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 CBWD2Q8IUF1 395 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 APPL2Q8NEU8 664 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 ZNF461Q8TAF7 563 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 ATOH1Q92858 354 aaPredicted RBP16.27■□□□□ 0.2
VPS39-210ENST00000568357 PDE11AQ9HCR9 933 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 WDR6Q9NNW5 1121 aaKnown RBP16.27■□□□□ 0.2
VPS39-210ENST00000568357 AGPAT3Q9NRZ7 376 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 RBAKQ9NYW8 714 aaPredicted RBP16.27■□□□□ 0.2
VPS39-210ENST00000568357 HSPBP1Q9NZL4 362 aa16.27■□□□□ 0.2
VPS39-210ENST00000568357 CITO14578 2027 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 VWA8A3KMH1 1905 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 WDR27A2RRH5 827 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 KIAA0391O15091 583 aaKnown RBP16.26■□□□□ 0.19
VPS39-210ENST00000568357 CLIC2O15247 247 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 ZNF202O95125 648 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 OAZ2O95190 189 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 C8AP07357 584 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 PRR29P0C7W0 189 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 ZXDAP98168 799 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 TFAMQ00059 246 aaKnown RBP16.26■□□□□ 0.19
VPS39-210ENST00000568357 PPM1LQ5SGD2 360 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 NT5DC4Q86YG4 428 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 KIAA0895Q8NCT3 520 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 SLC7A14Q8TBB6 771 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 BORCS6Q96GS4 357 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 SENP8Q96LD8 212 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 PIDD1Q9HB75 910 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 LIMD1Q9UGP4 676 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 USTQ9Y2C2 406 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 DCHS1Q96JQ0 3298 aa16.26■□□□□ 0.19
VPS39-210ENST00000568357 UBE4BO95155 1302 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 ZNF233A6NK53 670 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 CCL16O15467 120 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 N4BP1O75113 896 aaKnown RBP16.25■□□□□ 0.19
VPS39-210ENST00000568357 RPN1P04843 607 aaKnown RBP16.25■□□□□ 0.19
VPS39-210ENST00000568357 MYL1P05976 194 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 YWHAHQ04917 246 aaPredicted RBP16.25■□□□□ 0.19
VPS39-210ENST00000568357 PSMD2Q13200 908 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 KNOP1Q1ED39 458 aaKnown RBP16.25■□□□□ 0.19
VPS39-210ENST00000568357 UVSSAQ2YD98 709 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 LIN9Q5TKA1 542 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 ZNF280DQ6N043 979 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 CCDC149Q6ZUS6 474 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 ASCL5Q7RTU5 278 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 RDH13Q8NBN7 331 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 CXorf38Q8TB03 319 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 EXOC1Q9NV70 894 aa16.25■□□□□ 0.19
VPS39-210ENST00000568357 SEC24AO95486 1093 aa16.24■□□□□ 0.19
VPS39-210ENST00000568357 HNRNPA1P09651 372 aaKnown RBP eCLIP16.24■□□□□ 0.19
VPS39-210ENST00000568357 ATF2P15336 505 aa16.24■□□□□ 0.19
VPS39-210ENST00000568357 TYMPP19971 482 aa16.24■□□□□ 0.19
VPS39-210ENST00000568357 PAX3P23760 479 aa16.24■□□□□ 0.19
VPS39-210ENST00000568357 CYP2J2P51589 502 aa16.24■□□□□ 0.19
VPS39-210ENST00000568357 SNRPFP62306 86 aaKnown RBP16.24■□□□□ 0.19
VPS39-210ENST00000568357 DPYDQ12882 1025 aa16.24■□□□□ 0.19
VPS39-210ENST00000568357 USP37Q86T82 979 aa16.24■□□□□ 0.19
VPS39-210ENST00000568357 ZDHHC14Q8IZN3 488 aa16.24■□□□□ 0.19
VPS39-210ENST00000568357 C1orf127Q8N9H9 656 aa16.24■□□□□ 0.19
VPS39-210ENST00000568357 TDRD5Q8NAT2 981 aaKnown RBP16.24■□□□□ 0.19
VPS39-210ENST00000568357 CACTINQ8WUQ7 758 aaKnown RBP16.24■□□□□ 0.19
VPS39-210ENST00000568357 CLUHO75153 1309 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 PTPRJQ12913 1337 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms