RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 EPM2AIP1Q7L775 607 aaPredicted RBP20.25■□□□□ 0.83
CLN3-227ENST00000567495 TCEAL8Q8IYN2 117 aa20.25■□□□□ 0.83
CLN3-227ENST00000567495 ZNF507Q8TCN5 953 aa20.25■□□□□ 0.83
CLN3-227ENST00000567495 CBWD1Q9BRT8 395 aa20.25■□□□□ 0.83
CLN3-227ENST00000567495 RBAKQ9NYW8 714 aaPredicted RBP20.25■□□□□ 0.83
CLN3-227ENST00000567495 AFF4Q9UHB7 1163 aaKnown RBP20.25■□□□□ 0.83
CLN3-227ENST00000567495 DSEQ9UL01 958 aa20.25■□□□□ 0.83
CLN3-227ENST00000567495 ODC1P11926 461 aa20.24■□□□□ 0.83
CLN3-227ENST00000567495 FSHRP23945 695 aa20.24■□□□□ 0.83
CLN3-227ENST00000567495 PNPLA4P41247 253 aa20.24■□□□□ 0.83
CLN3-227ENST00000567495 ARPP19P56211 112 aa20.24■□□□□ 0.83
CLN3-227ENST00000567495 GPD1LQ8N335 351 aa20.24■□□□□ 0.83
CLN3-227ENST00000567495 SAAL1Q96ER3 474 aa20.24■□□□□ 0.83
CLN3-227ENST00000567495 SENP8Q96LD8 212 aa20.24■□□□□ 0.83
CLN3-227ENST00000567495 CGNQ9P2M7 1197 aaKnown RBP20.24■□□□□ 0.83
CLN3-227ENST00000567495 POLIQ9UNA4 740 aa20.24■□□□□ 0.83
CLN3-227ENST00000567495 TRIP11Q15643 1979 aa20.24■□□□□ 0.83
CLN3-227ENST00000567495 WDR27A2RRH5 827 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 CCL16O15467 120 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 ACTN4O43707 911 aaKnown RBP20.23■□□□□ 0.83
CLN3-227ENST00000567495 LRG1P02750 347 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 ASGR2P07307 311 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 PFKFB1P16118 471 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 AFMP43652 599 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 TAF6P49848 677 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 TDGQ13569 410 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 MYBPC2Q14324 1141 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 SURF1Q15526 300 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 OVOS1Q6IE37 1185 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 HFE2Q6ZVN8 426 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 HS2ST1Q7LGA3 356 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 GRASPQ7Z6J2 395 aaPredicted RBP20.23■□□□□ 0.83
CLN3-227ENST00000567495 HPS3Q969F9 1004 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 ZNF560Q96MR9 790 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 BLZF1Q9H2G9 400 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 HPSEQ9Y251 543 aa20.23■□□□□ 0.83
CLN3-227ENST00000567495 FAM237AA0A1B0GTK4 181 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 A0A1W2PQ27 194 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 A0A1W2PQ64 194 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 A0A1W2PQD8 194 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 ZNF233A6NK53 670 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 N4BP1O75113 896 aaKnown RBP20.22■□□□□ 0.83
CLN3-227ENST00000567495 CYP11A1P05108 521 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 LAMP2P13473 410 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 CPB1P15086 417 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 NUCB2P80303 420 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 TFAMQ00059 246 aaKnown RBP20.22■□□□□ 0.83
CLN3-227ENST00000567495 EFCAB13Q8IY85 973 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 PBXIP1Q96AQ6 731 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 PAGE5Q96GU1 130 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 MYADMQ96S97 322 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 KCNK12Q9HB15 430 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 CYP4F11Q9HBI6 524 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 AVENQ9NQS1 362 aaPredicted RBP20.22■□□□□ 0.83
CLN3-227ENST00000567495 SERTAD1Q9UHV2 236 aa20.22■□□□□ 0.83
CLN3-227ENST00000567495 TIMM13Q9Y5L4 95 aaPredicted RBP20.22■□□□□ 0.83
CLN3-227ENST00000567495 MYH15Q9Y2K3 1946 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 A0A1B0GVL5 298 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 PPEF2O14830 753 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 HOXD13P35453 343 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 SYKP43405 635 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 ADCY1Q08828 1119 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 PSMD2Q13200 908 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 CUL4BQ13620 913 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 BMT2Q1RMZ1 405 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 SV2CQ496J9 727 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 PABPC1LQ4VXU2 614 aaKnown RBP20.21■□□□□ 0.83
CLN3-227ENST00000567495 GET4Q7L5D6 327 aaPredicted RBP20.21■□□□□ 0.83
CLN3-227ENST00000567495 METTL23Q86XA0 190 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 ELMOD1Q8N336 334 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 GLIS3Q8NEA6 775 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 GOLGA5Q8TBA6 731 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 SCFD1Q8WVM8 642 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 ASIC4Q96FT7 647 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 PCIF1Q9H4Z3 704 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 ITGA11Q9UKX5 1188 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 CDH7Q9ULB5 785 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 INSL5Q9Y5Q6 135 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 VWA8A3KMH1 1905 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 TECTAO75443 2155 aa20.21■□□□□ 0.83
CLN3-227ENST00000567495 PLXNA3P51805 1871 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 GOLGA8IPA6NC78 632 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 GOLGA8JA6NMD2 632 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 KPNA7A9QM74 516 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 SPTLC1O15269 473 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 GPR17Q13304 367 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 SUGP1Q8IWZ8 645 aaKnown RBP20.2■□□□□ 0.82
CLN3-227ENST00000567495 TMEM130Q8N3G9 435 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 LRRC52Q8N7C0 313 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 NOC3LQ8WTT2 800 aaKnown RBP20.2■□□□□ 0.82
CLN3-227ENST00000567495 CCDC34Q96HJ3 373 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 KCNH6Q9H252 994 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 AGPAT3Q9NRZ7 376 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 EXOC1Q9NV70 894 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 HSPBP1Q9NZL4 362 aa20.2■□□□□ 0.82
CLN3-227ENST00000567495 R3HCC1Q9Y3T6 440 aaKnown RBP20.2■□□□□ 0.82
CLN3-227ENST00000567495 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.19■□□□□ 0.82
CLN3-227ENST00000567495 CYB561D2O14569 222 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 TGFB1I1O43294 461 aa20.19■□□□□ 0.82
CLN3-227ENST00000567495 PTPN2P17706 415 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms