RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 P3H4Q92791 437 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 RNF25Q96BH1 459 aaPredicted RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 ZBTB9Q96C00 473 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 DCPSQ96C86 337 aaKnown RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 CYFIP2Q96F07 1278 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 BTBD6Q96KE9 485 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 GPR20Q99678 358 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 ACO2Q99798 780 aaKnown RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 C11orf70Q9BRQ4 267 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 TRAIPQ9BWF2 469 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 NFKBIZQ9BYH8 718 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 FRMD8P1Q9BZ68 369 aaPredicted RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 CENPHQ9H3R5 247 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 CCDC134Q9H6E4 229 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 DDX56Q9NY93 547 aaKnown RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 ANKFY1Q9P2R3 1169 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 CPSF3Q9UKF6 684 aaKnown RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 NOVA2Q9UNW9 492 aaKnown RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 AGTPBP1Q9UPW5 1226 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 KCNH4Q9UQ05 1017 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 NUB1Q9Y5A7 615 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 DNAJC25-GNG10A0A024R161 153 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 TCRBV5S1A1TA0A578 114 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 TCRBV7S2A1N4TA0A589 114 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 ACKR2O00590 384 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 TLR3O15455 904 aaKnown RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 RGS16O15492 202 aaPredicted RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 MED7O43513 233 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 TCEA3O75764 348 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 TNNC2P02585 160 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 EDN1P05305 212 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 ABHD2P08910 425 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 KCNA4P22459 653 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 POLR2BP30876 1174 aaKnown RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 HPDP32754 393 aaPredicted RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 NF2P35240 595 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 MMP13P45452 471 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 MAGOHP61326 146 aaKnown RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 TNFAIP2Q03169 654 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 LAMTOR4Q0VGL1 99 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 TRPC3Q13507 836 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 PIGHQ14442 188 aaPredicted RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 KCTD2Q14681 263 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 FAM187BQ17R55 369 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 ODF2Q5BJF6 829 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 ZBTB41Q5SVQ8 909 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 LMBRD2Q68DH5 695 aaPredicted RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 SPOPLQ6IQ16 392 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 DNAJC24Q6P3W2 148 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 MPZL3Q6UWV2 235 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 GADL1Q6ZQY3 521 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 MMS22LQ6ZRQ5 1243 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 TSHZ1Q6ZSZ6 1077 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 TAOK1Q7L7X3 1001 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 FASTKD5Q7L8L6 764 aaKnown RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 TADA2BQ86TJ2 420 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 CPNE8Q86YQ8 564 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 ANKRD13AQ8IZ07 590 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 RCOR2Q8IZ40 523 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 RIBC1Q8N443 379 aaPredicted RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 OR5B17Q8NGF7 314 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 IPO4Q8TEX9 1081 aaKnown RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 PRPF31Q8WWY3 499 aaKnown RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 ZNF606Q8WXB4 792 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 CPA5Q8WXQ8 436 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 ANKRD36BP1Q96IX9 119 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 ZBTB45Q96K62 511 aaPredicted RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 FGD4Q96M96 766 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 SERPINB12Q96P63 405 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 CCT8L2Q96SF2 557 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 OSBPL8Q9BZF1 889 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 PHACTR1Q9C0D0 580 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 FZD8Q9H461 694 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 SMARCAD1Q9H4L7 1026 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 MROH8Q9H579 483 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 PTPRHQ9HD43 1115 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.64□□□□□ -1.35
CLN3-223ENST00000566472 PRMT7Q9NVM4 692 aaPredicted RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 WDR35Q9P2L0 1181 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 PPP1R1BQ9UD71 204 aaPredicted RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 ASIC3Q9UHC3 531 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 CHORDC1Q9UHD1 332 aaPredicted RBP6.64□□□□□ -1.35
CLN3-223ENST00000566472 STRIP2Q9ULQ0 834 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 TNFSF13BQ9Y275 285 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 EFR3BQ9Y2G0 817 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 NEU2Q9Y3R4 380 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 CEP83Q9Y592 693 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 FAM169AQ9Y6X4 670 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 COL1A2P08123 1366 aa6.64□□□□□ -1.35
CLN3-223ENST00000566472 TMEM191CA6NGB0 347 aa6.63□□□□□ -1.35
CLN3-223ENST00000566472 ASB14A6NK59 587 aa6.63□□□□□ -1.35
CLN3-223ENST00000566472 ZBTB42B2RXF5 422 aa6.63□□□□□ -1.35
CLN3-223ENST00000566472 E7EVH7 732 aa6.63□□□□□ -1.35
CLN3-223ENST00000566472 NOP56O00567 594 aaKnown RBP6.63□□□□□ -1.35
CLN3-223ENST00000566472 SOCS7O14512 581 aa6.63□□□□□ -1.35
CLN3-223ENST00000566472 RASGRF2O14827 1237 aa6.63□□□□□ -1.35
CLN3-223ENST00000566472 MEFVO15553 781 aaPredicted RBP6.63□□□□□ -1.35
CLN3-223ENST00000566472 CAND2O75155 1236 aa6.63□□□□□ -1.35
CLN3-223ENST00000566472 TJP3O95049 919 aa6.63□□□□□ -1.35
CLN3-223ENST00000566472 KRT1P04264 644 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms