RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CUEDC2Q9H467 287 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 AFF4Q9UHB7 1163 aaKnown RBP22.47■■□□□ 1.19
CLN3-219ENST00000565778 MRPS23Q9Y3D9 190 aaKnown RBP22.47■■□□□ 1.19
CLN3-219ENST00000565778 FRMD3A2A2Y4 597 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 ANHXE9PGG2 379 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 STK25O00506 426 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 RHOP08100 348 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 PAX3P23760 479 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 ME1P48163 572 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 AARSP49588 968 aaKnown RBP eCLIP22.46■■□□□ 1.19
CLN3-219ENST00000565778 NHLH1Q02575 133 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 ATL3Q6DD88 541 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 RNF19BQ6ZMZ0 732 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 FLCNQ8NFG4 579 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 SENP8Q96LD8 212 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 TMEM206Q9H813 350 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 KBTBD4Q9NVX7 518 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 DPP3Q9NY33 737 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 CFAP45Q9UL16 551 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 KCNH3Q9ULD8 1083 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 MAFFQ9ULX9 164 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 C2CD2Q9Y426 696 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 NUMBLQ9Y6R0 609 aa22.46■■□□□ 1.19
CLN3-219ENST00000565778 PIRO00625 290 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 PRPF6O94906 941 aaKnown RBP22.45■■□□□ 1.18
CLN3-219ENST00000565778 IL18RAPO95256 599 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 LDHAP00338 332 aaKnown RBP22.45■■□□□ 1.18
CLN3-219ENST00000565778 SRFP11831 508 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 HTR4Q13639 388 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 PKP1Q13835 747 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 E2F4Q16254 413 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 ASTLQ6HA08 431 aaPredicted RBP22.45■■□□□ 1.18
CLN3-219ENST00000565778 OVOS1Q6IE37 1185 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 PARM1Q6UWI2 310 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 STXBP4Q6ZWJ1 553 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 SIX5Q8N196 739 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 ELMOD1Q8N336 334 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 PRSS33Q8NF86 280 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 NOC3LQ8WTT2 800 aaKnown RBP22.45■■□□□ 1.18
CLN3-219ENST00000565778 ING5Q8WYH8 240 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 SAAL1Q96ER3 474 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 CORO1BQ9BR76 489 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 FGFBP2Q9BYJ0 223 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 WNT16Q9UBV4 365 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 INSL5Q9Y5Q6 135 aa22.45■■□□□ 1.18
CLN3-219ENST00000565778 ANO9A1A5B4 782 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 OR6C75A6NL08 312 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 SPTLC1O15269 473 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 POLR2DO15514 142 aaKnown RBP22.44■■□□□ 1.18
CLN3-219ENST00000565778 OR4Q2P0C623 313 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 ODC1P11926 461 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 TYMPP19971 482 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 GARTP22102 1010 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 CLCN5P51795 746 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 PTPN5P54829 565 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 MCRS1Q96EZ8 462 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 ZNF512Q96ME7 567 aaPredicted RBP22.44■■□□□ 1.18
CLN3-219ENST00000565778 RPP25Q9BUL9 199 aaKnown RBP22.44■■□□□ 1.18
CLN3-219ENST00000565778 TRIM9Q9C026 710 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 PCIF1Q9H4Z3 704 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 FAM13BQ9NYF5 915 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 PCDHA7Q9UN72 937 aa22.44■■□□□ 1.18
CLN3-219ENST00000565778 GOLGA8IPA6NC78 632 aa22.43■■□□□ 1.18
CLN3-219ENST00000565778 GOLGA8JA6NMD2 632 aa22.43■■□□□ 1.18
CLN3-219ENST00000565778 ASIC1P78348 528 aa22.43■■□□□ 1.18
CLN3-219ENST00000565778 DNM1Q05193 864 aaKnown RBP22.43■■□□□ 1.18
CLN3-219ENST00000565778 IQCEQ6IPM2 695 aa22.43■■□□□ 1.18
CLN3-219ENST00000565778 ARMCX5Q6P1M9 558 aa22.43■■□□□ 1.18
CLN3-219ENST00000565778 MTSS1LQ765P7 747 aa22.43■■□□□ 1.18
CLN3-219ENST00000565778 FGF14Q92915 247 aa22.43■■□□□ 1.18
CLN3-219ENST00000565778 HPS3Q969F9 1004 aa22.43■■□□□ 1.18
CLN3-219ENST00000565778 PGLYRP2Q96PD5 576 aa22.43■■□□□ 1.18
CLN3-219ENST00000565778 ZNF197O14709 1029 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 RFX1P22670 979 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 TFAMQ00059 246 aaKnown RBP22.42■■□□□ 1.18
CLN3-219ENST00000565778 TWF1Q12792 350 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 CYP4A22Q5TCH4 519 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 METTL23Q86XA0 190 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 NT5DC4Q86YG4 428 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 NPAS3Q8IXF0 933 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 TMEM105Q8N8V8 129 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 ZSWIM2Q8NEG5 633 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 CACTINQ8WUQ7 758 aaKnown RBP22.42■■□□□ 1.18
CLN3-219ENST00000565778 CBWD1Q9BRT8 395 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 RBAKQ9NYW8 714 aaPredicted RBP22.42■■□□□ 1.18
CLN3-219ENST00000565778 CA14Q9ULX7 337 aa22.42■■□□□ 1.18
CLN3-219ENST00000565778 PDCD11Q14690 1871 aaKnown RBP22.42■■□□□ 1.18
CLN3-219ENST00000565778 CYB561D2O14569 222 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 NPR3P17342 541 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 TAF6P49848 677 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 NUBP1P53384 320 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 DUSP4Q13115 394 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 GPR17Q13304 367 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 MYBPC2Q14324 1141 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 SLC5A9Q2M3M2 681 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 PDZD4Q76G19 769 aaPredicted RBP22.41■■□□□ 1.18
CLN3-219ENST00000565778 EFCAB13Q8IY85 973 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 GPR152Q8TDT2 470 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 C7orf25Q9BPX7 421 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 PYM1Q9BRP8 204 aaKnown RBP22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms