RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PLA2G2CQ5R387 149 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 DAB2IPQ5VWQ8 1189 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 CDCA2Q69YH5 1023 aaPredicted RBP8.04□□□□□ -1.12
VPS4A-203ENST00000564399 ZNF280DQ6N043 979 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 APBB1IPQ7Z5R6 666 aaPredicted RBP8.04□□□□□ -1.12
VPS4A-203ENST00000564399 ARID3BQ8IVW6 561 aaPredicted RBP8.04□□□□□ -1.12
VPS4A-203ENST00000564399 FBXL16Q8N461 479 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 RSPRY1Q96DX4 576 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 ZFYVE19Q96K21 471 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 CCDC94Q9BW85 323 aaPredicted RBP8.04□□□□□ -1.12
VPS4A-203ENST00000564399 AGXT2Q9BYV1 514 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 ADAM33Q9BZ11 813 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 AFF4Q9UHB7 1163 aaKnown RBP8.04□□□□□ -1.12
VPS4A-203ENST00000564399 LHX6Q9UPM6 363 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 SNX14Q9Y5W7 946 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 ZZEF1O43149 2961 aa8.04□□□□□ -1.12
VPS4A-203ENST00000564399 DSPP15924 2871 aaKnown RBP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 NUP210Q8TEM1 1887 aaPredicted RBP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 CCDC163A0A0D9SF12 145 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 SRRM3A6NNA2 597 aaPredicted RBP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 ATG13O75143 517 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 XRCC6P12956 609 aaKnown RBP eCLIP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 MARCKSP29966 332 aaPredicted RBP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 MCM4P33991 863 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 TXKP42681 527 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 EPHB3P54753 998 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 EPHA5P54756 1037 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 EVCP57679 992 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 OSTNP61366 133 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 CCINQ13939 588 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 PPP2R5AQ15172 486 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 ELF2Q15723 593 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 CALCRLQ16602 461 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 PLK5Q496M5 336 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 BMP2KLQ5H9B9 411 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 SH3PXD2AQ5TCZ1 1133 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 ATF7IP2Q5U623 682 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 PKN3Q6P5Z2 889 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 LRSAM1Q6UWE0 723 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 RNF19BQ6ZMZ0 732 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 APPL2Q8NEU8 664 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 OXER1Q8TDS5 423 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 ZCCHC14Q8WYQ9 949 aaKnown RBP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 BSNDQ8WZ55 320 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 KCNB2Q92953 911 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 TMEM209Q96SK2 561 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 LARP6Q9BRS8 491 aaKnown RBP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 SCNM1Q9BWG6 230 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 TTC12Q9H892 705 aaPredicted RBP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 TOPORSQ9NS56 1045 aaPredicted RBP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 SLC38A7Q9NVC3 462 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 MAFFQ9ULX9 164 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 YIPF1Q9Y548 306 aa8.03□□□□□ -1.12
VPS4A-203ENST00000564399 FLNBO75369 2602 aaKnown RBP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 SETXQ7Z333 2677 aaKnown RBP8.03□□□□□ -1.12
VPS4A-203ENST00000564399 UNC79Q9P2D8 2635 aa8.02□□□□□ -1.12
VPS4A-203ENST00000564399 AKAP13Q12802 2813 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 FAM205CA6NFA0 338 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 CDC45O75419 566 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 AKAP3O75969 853 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 RHOBTB1O94844 696 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 CAVIN2O95810 425 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 TOP3BO95985 862 aaKnown RBP8.02□□□□□ -1.13
VPS4A-203ENST00000564399 EDN1P05305 212 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 GBP1P32455 592 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 HSPA4P34932 840 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 NAMPTP43490 491 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 EFNA5P52803 228 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 IRX6P78412 446 aaPredicted RBP8.02□□□□□ -1.13
VPS4A-203ENST00000564399 PLCB2Q00722 1185 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 RING1Q06587 406 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 TNK2Q07912 1038 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 GRSF1Q12849 480 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS4A-203ENST00000564399 PLD1Q13393 1074 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 MRPL58Q14197 206 aaKnown RBP8.02□□□□□ -1.13
VPS4A-203ENST00000564399 PTPAQ15257 358 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 ITPRIPL2Q3MIP1 535 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 ARHGAP15Q53QZ3 475 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 STXBP5Q5T5C0 1151 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 GPR158Q5T848 1215 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 NT5DC1Q5TFE4 455 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 CEP120Q8N960 986 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 BPIFB1Q8TDL5 484 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 ZC3H10Q96K80 434 aaKnown RBP8.02□□□□□ -1.13
VPS4A-203ENST00000564399 IFT74Q96LB3 600 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 YTHDC1Q96MU7 727 aaKnown RBP8.02□□□□□ -1.13
VPS4A-203ENST00000564399 PGLYRP2Q96PD5 576 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 KIFC3Q9BVG8 833 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 CCDC113Q9H0I3 377 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 DUSP15Q9H1R2 295 aaPredicted RBP8.02□□□□□ -1.13
VPS4A-203ENST00000564399 ATXN3LQ9H3M9 355 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 GJB4Q9NTQ9 266 aa8.02□□□□□ -1.13
VPS4A-203ENST00000564399 THG1LQ9NWX6 298 aaKnown RBP8.02□□□□□ -1.13
VPS4A-203ENST00000564399 ARHGEF35A5YM69 484 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 K7ERI5 159 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 CDKL5O76039 1030 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 CEACAM1P13688 526 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 CYP11B2P19099 503 aa8.01□□□□□ -1.13
VPS4A-203ENST00000564399 RPL9P32969 192 aaKnown RBP8.01□□□□□ -1.13
VPS4A-203ENST00000564399 GRM5P41594 1212 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms