RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	USH1C	Q9Y6N9	552 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	LRRC37A2	A6NM11	1700 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	ASTN1	O14525	1302 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	MAPK13	O15264	365 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	TCEA3	O75764	348 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	GRB10	Q13322	594 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	KPNB1	Q14974	876 aa	Known RBP	11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	FAM110C	Q1W6H9	321 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	PPP1R21	Q6ZMI0	780 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	ARHGEF18	Q6ZSZ5	1173 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	CYFIP1	Q7L576	1253 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	VSIG1	Q86XK7	387 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	SHCBP1	Q8NEM2	672 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	DNER	Q8NFT8	737 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	LRRC8C	Q8TDW0	803 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	SNX29	Q8TEQ0	813 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	GBP5	Q96PP8	586 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	NR1H4	Q96RI1	486 aa	Predicted RBP	11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	MAF1	Q9H063	256 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	MYLK2	Q9H1R3	596 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	KCNH7	Q9NS40	1196 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	MORF4L1	Q9UBU8	362 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	UBIAD1	Q9Y5Z9	338 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228	GMEB1	Q9Y692	573 aa		11.75	□□□□□ -0.53
TCF4-222	ENST00000564228		A0A1B0GVG6	124 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	IPO5	O00410	1097 aa	Known RBP	11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	MAGEB2	O15479	319 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	CHMP2A	O43633	222 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	TJP3	O95049	919 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	STX2	P32856	288 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	RPL21	P46778	160 aa	Known RBP	11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	CACNA2D1	P54289	1103 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	LRRC14	Q15048	493 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	KRT79	Q5XKE5	535 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	DPY19L2P1	Q6NXN4	242 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	VSIG10L	Q86VR7	867 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	LONP2	Q86WA8	852 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	RFFL	Q8WZ73	363 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	RAD54L	Q92698	747 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	GATA6	Q92908	595 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	ART4	Q93070	314 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	DDX23	Q9BUQ8	820 aa	Known RBP	11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	TBC1D10A	Q9BXI6	508 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	METTL14	Q9HCE5	456 aa	Known RBP	11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	LNPEP	Q9UIQ6	1025 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	DBR1	Q9UK59	544 aa	Known RBP	11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	NR2E1	Q9Y466	385 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	PCDHA3	Q9Y5H8	950 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	ACTL7B	Q9Y614	415 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	IVNS1ABP	Q9Y6Y0	642 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	ADGRA3	Q8IWK6	1321 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	SYNGAP1	Q96PV0	1343 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	MGAM	O43451	1857 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	SOWAHB	A6NEL2	793 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	DDX39A	O00148	427 aa	Known RBP	11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	GAS7	O60861	476 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	BCR	P11274	1271 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	SLCO1A2	P46721	670 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	RCN2	Q14257	317 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	DEFB115	Q30KQ5	88 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	DCAF12L1	Q5VU92	463 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	XRRA1	Q6P2D8	792 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	NIPA1	Q7RTP0	329 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	SLC17A8	Q8NDX2	589 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	MGARP	Q8TDB4	240 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	SLC5A5	Q92911	643 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	CDK5RAP3	Q96JB5	506 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	NDN	Q99608	321 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	NUDT12	Q9BQG2	462 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	UBE2O	Q9C0C9	1292 aa	Known RBP	11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	ARMCX3	Q9UH62	379 aa	Predicted RBP	11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	LGALS13	Q9UHV8	139 aa		11.74	□□□□□ -0.53
TCF4-222	ENST00000564228	MYH9	P35579	1960 aa	Known RBP	11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	AOC2	O75106	756 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	TMEM253	P0C7T8	217 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	TAC1	P20366	129 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	FGFR4	P22455	802 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	CTNNA2	P26232	953 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	MARK3	P27448	753 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	PTPN4	P29074	926 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	GSTT1	P30711	240 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	APLP1	P51693	650 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	SPIRE1	Q08AE8	756 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	SFSWAP	Q12872	951 aa	Known RBP	11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	MYBPC3	Q14896	1274 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	STXBP2	Q15833	593 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	RGS9BP	Q6ZS82	235 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	NLRX1	Q86UT6	975 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	NELFCD	Q8IXH7	590 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	STKLD1	Q8NE28	680 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	UCMA	Q8WVF2	138 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	GLG1	Q92896	1179 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	PNMA5	Q96PV4	448 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	LRRC37B	Q96QE4	947 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	IWS1	Q96ST2	819 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	TEKT3	Q9BXF9	490 aa		11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	DENND2D	Q9H6A0	471 aa	Predicted RBP	11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.73	□□□□□ -0.53
TCF4-222	ENST00000564228	AGO4	Q9HCK5	861 aa	Known RBP	11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms