RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 TMEM62Q0P6H9 643 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 TRPC3Q13507 836 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 PTPROQ16827 1216 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 ALKBH5Q6P6C2 394 aaKnown RBP9.59□□□□□ -0.87
VPS39-207ENST00000563692 C15orf39Q6ZRI6 1047 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 ARHGEF19Q8IW93 802 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 CD302Q8IX05 232 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 THNSL1Q8IYQ7 743 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 SLC35F6Q8N357 371 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 FBXO22Q8NEZ5 403 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 TRIM58Q8NG06 486 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 TAS1R2Q8TE23 839 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 GDPD5Q8WTR4 605 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 ZNF516Q92618 1163 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 SEMA4DQ92854 862 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 ZBTB10Q96DT7 871 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 FAM212AQ96EL1 285 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 ANKRD36BP1Q96IX9 119 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 ZNF668Q96K58 619 aaPredicted RBP9.59□□□□□ -0.87
VPS39-207ENST00000563692 CALR3Q96L12 384 aaKnown RBP9.59□□□□□ -0.87
VPS39-207ENST00000563692 NOX5Q96PH1 765 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 AGPAT1Q99943 283 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 COL25A1Q9BXS0 654 aaPredicted RBP9.59□□□□□ -0.87
VPS39-207ENST00000563692 CELF4Q9BZC1 486 aaKnown RBP9.59□□□□□ -0.87
VPS39-207ENST00000563692 HAPLN2Q9GZV7 340 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 L2HGDHQ9H9P8 463 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 RNF216Q9NWF9 866 aaPredicted RBP9.59□□□□□ -0.87
VPS39-207ENST00000563692 LMCD1Q9NZU5 365 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 NAGPAQ9UK23 515 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 RWDD3Q9Y3V2 267 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 MTCH2Q9Y6C9 303 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 KAT6AQ92794 2004 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 CNTNAP2Q9UHC6 1331 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 A0A087X0T9 212 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.58□□□□□ -0.88
VPS39-207ENST00000563692 EPOPA6NHQ4 379 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 BTNL10A8MVZ5 291 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 ZNF263O14978 683 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 CLSTN1O94985 981 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 HLA-DRAP01903 254 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 H2AFZP0C0S5 128 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 TMEM191BP0C7N4 346 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 FAM228BP0C875 321 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 STAG3L1P0CL83 205 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 TBXAS1P24557 533 aaPredicted RBP9.58□□□□□ -0.88
VPS39-207ENST00000563692 AXLP30530 894 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 CD52P31358 61 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 GTF2F1P35269 517 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS39-207ENST00000563692 HTRA4P83105 476 aaPredicted RBP9.58□□□□□ -0.88
VPS39-207ENST00000563692 NFX1Q12986 1120 aaKnown RBP9.58□□□□□ -0.88
VPS39-207ENST00000563692 SGSM1Q2NKQ1 1148 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 DCAF4L1Q3SXM0 396 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 H2AFVQ71UI9 128 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 FAM71AQ8IYT1 594 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 FIBCD1Q8N539 461 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 HELQQ8TDG4 1101 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 WDR24Q96S15 920 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 OSBPL7Q9BZF2 842 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 IRX2Q9BZI1 471 aaPredicted RBP9.58□□□□□ -0.88
VPS39-207ENST00000563692 GPR88Q9GZN0 384 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 LACRTQ9GZZ8 138 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 ADAMTS10Q9H324 1103 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 ASB7Q9H672 318 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 MINDY3Q9H8M7 445 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 TOPORSQ9NS56 1045 aaPredicted RBP9.58□□□□□ -0.88
VPS39-207ENST00000563692 AJAP1Q9UKB5 411 aaPredicted RBP9.58□□□□□ -0.88
VPS39-207ENST00000563692 LRFN2Q9ULH4 789 aa9.58□□□□□ -0.88
VPS39-207ENST00000563692 ATP8B3O60423 1300 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 A0A0U1RQJ8 604 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 A0A1B0GUA9 196 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 MACROD2A1Z1Q3 448 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 TTLL13PA6NNM8 815 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 DYNC1I1O14576 645 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 ENPP3O14638 875 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 ABLIM1O14639 778 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 GPR182O15218 404 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 B4GALT5O43286 388 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 LRRN2O75325 713 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 RPS6KA5O75582 802 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 EDN1P05305 212 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 ARF4P18085 180 aaPredicted RBP9.57□□□□□ -0.88
VPS39-207ENST00000563692 TNFSF9P41273 254 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 CRYBB1P53674 252 aaPredicted RBP9.57□□□□□ -0.88
VPS39-207ENST00000563692 TFAMQ00059 246 aaKnown RBP9.57□□□□□ -0.88
VPS39-207ENST00000563692 NCOA4Q13772 614 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 BTG3Q14201 252 aaPredicted RBP9.57□□□□□ -0.88
VPS39-207ENST00000563692 AMHR2Q16671 573 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 KIZQ2M2Z5 673 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 SEZ6Q53EL9 994 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 ZBTB41Q5SVQ8 909 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 TDRD10Q5VZ19 366 aaKnown RBP9.57□□□□□ -0.88
VPS39-207ENST00000563692 CATSPER4Q7RTX7 472 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 TRAPPC11Q7Z392 1133 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 NT5DC4Q86YG4 428 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 NPAS4Q8IUM7 802 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 GPIHBP1Q8IV16 184 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 CEP112Q8N8E3 955 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 MNS1Q8NEH6 495 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 SLC30A5Q8TAD4 765 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 SP7Q8TDD2 431 aaPredicted RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms