RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 WASF2Q9Y6W5 498 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 PFASO15067 1338 aa14.09□□□□□ -0.15
CLK3-206ENST00000562078 CASP5P51878 434 aa14.08□□□□□ -0.15
CLK3-206ENST00000562078 YARSP54577 528 aaKnown RBP14.08□□□□□ -0.15
CLK3-206ENST00000562078 FKBP3Q00688 224 aaKnown RBP14.08□□□□□ -0.15
CLK3-206ENST00000562078 MKRN3Q13064 507 aaKnown RBP14.08□□□□□ -0.15
CLK3-206ENST00000562078 DGKZQ13574 1117 aa14.08□□□□□ -0.15
CLK3-206ENST00000562078 ZRSR2Q15696 482 aaKnown RBP14.08□□□□□ -0.15
CLK3-206ENST00000562078 GSTA3Q16772 222 aa14.08□□□□□ -0.15
CLK3-206ENST00000562078 MARK2Q7KZI7 788 aaKnown RBP14.08□□□□□ -0.15
CLK3-206ENST00000562078 SYT2Q8N9I0 419 aaPredicted RBP14.08□□□□□ -0.15
CLK3-206ENST00000562078 NR1H4Q96RI1 486 aaPredicted RBP14.08□□□□□ -0.15
CLK3-206ENST00000562078 BHMT2Q9H2M3 363 aa14.08□□□□□ -0.15
CLK3-206ENST00000562078 LARSQ9P2J5 1176 aaKnown RBP14.08□□□□□ -0.15
CLK3-206ENST00000562078 ZNF112Q9UJU3 913 aa14.08□□□□□ -0.15
CLK3-206ENST00000562078 COL4A3BPQ9Y5P4 624 aa14.08□□□□□ -0.15
CLK3-206ENST00000562078 WDR81Q562E7 1941 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 PLA2G6O60733 806 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 E2F6O75461 281 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 BRAFP15056 766 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 VARSP26640 1264 aaKnown RBP14.08□□□□□ -0.16
CLK3-206ENST00000562078 PTK2Q05397 1052 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 MAP7Q14244 749 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 FOXR2Q6PJQ5 311 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 CROCCP2Q86T23 111 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 CCDC25Q86WR0 208 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 SFR1Q86XK3 245 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 SPOCK2Q92563 424 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 SYN2Q92777 582 aaPredicted RBP14.08□□□□□ -0.16
CLK3-206ENST00000562078 KLRG1Q96E93 195 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 MAGEB18Q96M61 343 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 TSPAN18Q96SJ8 248 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 EDEM3Q9BZQ6 932 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 MIS12Q9H081 205 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 AS3MTQ9HBK9 375 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.08□□□□□ -0.163e-8■■■■■ 160.7
CLK3-206ENST00000562078 INIPQ9NRY2 104 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 EMILIN3Q9NT22 766 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 ARHGEF38Q9NXL2 777 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 CCPG1Q9ULG6 757 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 STXBP5LQ9Y2K9 1186 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 SH3GLB1Q9Y371 365 aa14.08□□□□□ -0.16
CLK3-206ENST00000562078 IQCA1LA6NCM1 817 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 RSPH10B2B2RC85 870 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 OR6B1O95007 311 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 PSMG1O95456 288 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 RSPH10BP0C881 870 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 RPL21P46778 160 aaKnown RBP14.07□□□□□ -0.16
CLK3-206ENST00000562078 MTMR2Q13614 643 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 CTTNQ14247 550 aaKnown RBP14.07□□□□□ -0.16
CLK3-206ENST00000562078 KBTBD12Q3ZCT8 623 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLK3-206ENST00000562078 TAF1BQ53T94 588 aaPredicted RBP14.07□□□□□ -0.16
CLK3-206ENST00000562078 ZNF554Q86TJ5 538 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 NT5DC3Q86UY8 548 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 C17orf50Q8WW18 174 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 ZNF653Q96CK0 615 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 RUSC1Q9BVN2 902 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 CADM1Q9BY67 442 aaKnown RBP14.07□□□□□ -0.16
CLK3-206ENST00000562078 OXCT2Q9BYC2 517 aaPredicted RBP14.07□□□□□ -0.16
CLK3-206ENST00000562078 EHMT1Q9H9B1 1298 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 CLIC5Q9NZA1 410 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 TBC1D30Q9Y2I9 924 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 RABGAP1Q9Y3P9 1069 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 BTNL10A8MVZ5 291 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 DDX3XO00571 662 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLK3-206ENST00000562078 MAPK13O15264 365 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 ACSL3O95573 720 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 PTPN4P29074 926 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 RASSF2P50749 326 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 CDR2Q01850 454 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 SPP2Q13103 211 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 EXOC3L4Q17RC7 722 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 DCAF12L1Q5VU92 463 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 C18orf8Q96DM3 657 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 POLR3CQ9BUI4 534 aaPredicted RBP14.07□□□□□ -0.16
CLK3-206ENST00000562078 KCTD10Q9H3F6 313 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLK3-206ENST00000562078 SUCLA2Q9P2R7 463 aaPredicted RBP14.07□□□□□ -0.16
CLK3-206ENST00000562078 STK24Q9Y6E0 443 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 PHIPQ8WWQ0 1821 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 KIAA1217Q5T5P2 1943 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 OTOFQ9HC10 1997 aa14.07□□□□□ -0.16
CLK3-206ENST00000562078 FAM170AA1A519 330 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 TRAFD1O14545 582 aaPredicted RBP14.06□□□□□ -0.16
CLK3-206ENST00000562078 PSMD10O75832 226 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 ALOX15P16050 662 aaPredicted RBP14.06□□□□□ -0.16
CLK3-206ENST00000562078 GRIA2P42262 883 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 DNAJC3Q13217 504 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 ZNF211Q13398 564 aaPredicted RBP14.06□□□□□ -0.16
CLK3-206ENST00000562078 ASIC2Q16515 512 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 CEP55Q53EZ4 464 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 DAB2IPQ5VWQ8 1189 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 OTOP1Q7RTM1 612 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 ZNF571Q7Z3V5 609 aaPredicted RBP14.06□□□□□ -0.16
CLK3-206ENST00000562078 SCUBE1Q8IWY4 988 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 SPIRE2Q8WWL2 714 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 HAUS1Q96CS2 278 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 TLE6Q9H808 572 aa14.06□□□□□ -0.16
CLK3-206ENST00000562078 SLCO1B3Q9NPD5 702 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms