RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 SHCBP1LQ9BZQ2 653 aa7.49□□□□□ -1.21
USP3-210ENST00000559192 MIS12Q9H081 205 aa7.49□□□□□ -1.21
USP3-210ENST00000559192 UNC45AQ9H3U1 944 aa7.49□□□□□ -1.21
USP3-210ENST00000559192 EPS15L1Q9UBC2 864 aa7.49□□□□□ -1.21
USP3-210ENST00000559192 SLC9A2Q9UBY0 812 aa7.49□□□□□ -1.21
USP3-210ENST00000559192 LRRC37A3O60309 1634 aa7.49□□□□□ -1.21
USP3-210ENST00000559192 RBAK-RBAKDNI3L0D1 243 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 MCF2P10911 925 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 QARSP47897 775 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 CCNHP51946 323 aaPredicted RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 NCALDP61601 193 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 DSG1Q02413 1049 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 DAB2IPQ5VWQ8 1189 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 RCOR2Q8IZ40 523 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 SLC25A41Q8N5S1 370 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 CCNYQ8ND76 341 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 TTC8Q8TAM2 541 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 SNRNP27Q8WVK2 155 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 SHISA4Q96DD7 197 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 ATXN7L3BQ96GX2 97 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 ANKRD36BP1Q96IX9 119 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 HEXIM2Q96MH2 286 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 SENP7Q9BQF6 1050 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 CBWD1Q9BRT8 395 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 COA1Q9GZY4 146 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 TDRD3Q9H7E2 651 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 RAVER2Q9HCJ3 691 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 PICK1Q9NRD5 415 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 TOPORSQ9NS56 1045 aaPredicted RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 PCMTD2Q9NV79 361 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 ARIH1Q9Y4X5 557 aaPredicted RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 LMTK3Q96Q04 1460 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 NFAT5O94916 1531 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 HNRNPCL1O60812 293 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 RPS6KA4O75676 772 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 UBE4BO95155 1302 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 CALB1P05937 261 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 P4HA1P13674 534 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 ACAD10Q6JQN1 1059 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 PAWRQ96IZ0 340 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 RPS6KC1Q96S38 1066 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 TMEM120AQ9BXJ8 343 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 ACP6Q9NPH0 428 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 BAG5Q9UL15 447 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 AFF2P51816 1311 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 MAGEA13PA6NCF6 341 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 HNRNPCL2B2RXH8 293 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 TPD52L2O43399 206 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 KRT8P05787 483 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 SMARCA1P28370 1054 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 CCND2P30279 289 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 ACOT2P49753 483 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 EIF3EP60228 445 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 IGBP1P78318 339 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 SLC27A3Q5K4L6 730 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 C11orf63Q6NUN7 778 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 MIS18BP1Q6P0N0 1132 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 IRF2BP2Q7Z5L9 587 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 ZBTB8OSQ8IWT0 167 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 SLC5A5Q92911 643 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 DNAJC19Q96DA6 116 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 RTFDC1Q9BY42 306 aaPredicted RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 VPS11Q9H270 941 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 DNAJC18Q9H819 358 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 CHST7Q9NS84 486 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 ZNF229Q9UJW7 825 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 MTO1Q9Y2Z2 717 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 SRRM3A6NNA2 597 aaPredicted RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 H0YIN7 160 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 KIAA0391O15091 583 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 TBX3O15119 743 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 CYP11B1P15538 503 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 TMEM259Q4ZIN3 620 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 DUPD1Q68J44 220 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 KIAA1683Q9H0B3 1180 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 KLC2Q9H0B6 622 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 WWP1Q9H0M0 922 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 POLR3FQ9H1D9 316 aaPredicted RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 IKZF4Q9H2S9 585 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 RIOX1Q9H6W3 641 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 KRT82Q9NSB4 513 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.48□□□□□ -1.21
USP3-210ENST00000559192 PPME1Q9Y570 386 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 RASSF9O75901 435 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 KRT38O76015 456 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 SRGAP2CP0DJJ0 459 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 CACNA2D1P54289 1103 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 SLC12A2P55011 1212 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 BTKQ06187 659 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 LAMB3Q13751 1172 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 NPY5RQ15761 445 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 CHI3L2Q15782 390 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 PKN2Q16513 984 aaKnown RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 CEP55Q53EZ4 464 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 CYP4A22Q5TCH4 519 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 PCNX4Q63HM2 1172 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 LARGE2Q8N3Y3 721 aa7.48□□□□□ -1.21
USP3-210ENST00000559192 RIBC1Q8N443 379 aaPredicted RBP7.48□□□□□ -1.21
USP3-210ENST00000559192 CYP2W1Q8TAV3 490 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms