RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ATRNL1Q5VV63 1379 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 TCRBV7S2A1N4TA0A589 114 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 PRSS29PA6NIE9 313 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 TMEM233B4DJY2 109 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 GRM6O15303 877 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 SLC16A6O15403 523 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 DAPK3O43293 454 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 PHF2O75151 1096 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 ERBB2P04626 1255 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 CHGBP05060 677 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 RAP2AP10114 183 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 HARSP12081 509 aaKnown RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 ALOX15P16050 662 aaPredicted RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 ITGB6P18564 788 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 ACO1P21399 889 aaKnown RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 COMTP21964 271 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 CRHR1P34998 444 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 ADRA1BP35368 520 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 HALP42357 657 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 STT3AP46977 705 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 FLT3LGP49771 235 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 MEOX1P50221 254 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 ADCY7P51828 1080 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 SUMO3P55854 103 aaPredicted RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 SOX8P57073 446 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 GPSM2P81274 684 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 HGFACQ04756 655 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 RAB39AQ14964 217 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 MAN2A1Q16706 1144 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 RNF151Q2KHN1 245 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 LONRF3Q496Y0 759 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 HS1BP3Q53T59 392 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 KHDC1LQ5JSQ8 128 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 COLEC12Q5KU26 742 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 THEMIS2Q5TEJ8 643 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 PAPD7Q5XG87 772 aaKnown RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 AFMIDQ63HM1 303 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 ANKS6Q68DC2 871 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 KRT40Q6A162 431 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 HIBCHQ6NVY1 386 aaPredicted RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 CCDC174Q6PII3 467 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 ZNF572Q7Z3I7 529 aaPredicted RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 UBE3BQ7Z3V4 1068 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 ADGRE4PQ86SQ3 457 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 TAX1BP1Q86VP1 789 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 FAM90A1Q86YD7 464 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 CCDC33Q8N5R6 958 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 RNF152Q8N8N0 203 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 ENAHQ8N8S7 591 aaPredicted RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 GPR150Q8NGU9 434 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 SLC35B2Q8TB61 432 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 CFHR4Q92496 578 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 GCDHQ92947 438 aaPredicted RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 TNPO1Q92973 898 aaKnown RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 PHKBQ93100 1093 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 GFM2Q969S9 779 aaKnown RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 C18orf8Q96DM3 657 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 AJUBAQ96IF1 538 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 PAWRQ96IZ0 340 aaKnown RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 GPHA2Q96T91 129 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 PCGF6Q9BYE7 350 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 LRRC27Q9C0I9 530 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 WDR12Q9GZL7 423 aaKnown RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 BTBD1Q9H0C5 482 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 ENKD1Q9H0I2 346 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 C11orf54Q9H0W9 315 aaPredicted RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 KIAA1586Q9HCI6 787 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 SACM1LQ9NTJ5 587 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 TRMT13Q9NUP7 481 aaKnown RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 MRPS18AQ9NVS2 196 aaKnown RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 CAMSAP3Q9P1Y5 1249 aaPredicted RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 COL20A1Q9P218 1284 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 TBC1D30Q9Y2I9 924 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 VWA7Q9Y334 891 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 PCDHGB3Q9Y5G1 929 aa2.02□□□□□ -2.09
USP3-209ENST00000558925 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.02□□□□□ -2.09
USP3-209ENST00000558925 MORC2Q9Y6X9 1032 aaPredicted RBP2.02□□□□□ -2.09
USP3-209ENST00000558925 PNPLA7Q6ZV29 1317 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 A0A087WV62 115 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 CXorf49A8MYA2 514 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 MATN2O00339 956 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 KIAA0391O15091 583 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 FRS3O43559 492 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 PPFIA4O75335 1185 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 CYP7B1O75881 506 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 RPLP2P05387 115 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 ADH4P08319 380 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 PARP1P09874 1014 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 VSIG10L2P0DP72 767 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 GYPEP15421 78 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 EN2P19622 333 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 PROZP22891 400 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 SLC6A2P23975 617 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 SMARCA1P28370 1054 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 CHKAP35790 457 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 PPM1AP35813 382 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 MAPK10P53779 464 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 WNT3AP56704 352 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 CTXN1P60606 82 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 RAP2BP61225 183 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms