RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 MROH8Q9H579 483 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 FAM204AQ9H8W3 233 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 RAVER2Q9HCJ3 691 aaKnown RBP5.66□□□□□ -1.5
LDLR-209ENST00000558528 NGRNQ9NPE2 291 aaKnown RBP5.66□□□□□ -1.5
LDLR-209ENST00000558528 ANO10Q9NW15 660 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 PCDHA12Q9UN75 941 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 HPSEQ9Y251 543 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 PCDHA9Q9Y5H5 950 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 NR2E3Q9Y5X4 410 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 MYH1P12882 1939 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 TMEM265A0A087WTH1 108 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 ELOA3CA0A087WX78 387 aaPredicted RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 LOC100289279A0A1B0GTE1 492 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 A0A1B0GVL5 298 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 VWA3AA6NCI4 1184 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 ELOA3DA6NLF2 546 aaPredicted RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 LINC01387J3KSC0 135 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 TMPRSS2O15393 492 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 SETSIPP0DME0 302 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 PFKFB1P16118 471 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 BMP8BP34820 402 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 GRIK1P39086 918 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 PPP1R2P41236 205 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 TXKP42681 527 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 MRE11P49959 708 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 NDUFA8P51970 172 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 PCBP4P57723 403 aaKnown RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 HERVK_113P62684 666 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 TPM4P67936 248 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 BTKQ06187 659 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 SREBF2Q12772 1141 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 PLS1Q14651 629 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 TMEM132BQ14DG7 1078 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 UBE2SQ16763 222 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 ELOA3BQ3SY89 546 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 CEP55Q53EZ4 464 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 EARS2Q5JPH6 523 aaKnown RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 ARHGEF16Q5VV41 709 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 PRAMEF13Q5VWM6 474 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 RRAGBQ5VZM2 374 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 SNRNP48Q6IEG0 339 aaKnown RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 PGM2L1Q6PCE3 622 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 KCNV1Q6PIU1 500 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 C1orf228Q6PIY5 440 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 RASGRP2Q7LDG7 609 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 FMR1NBQ8N0W7 255 aaPredicted RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 ANKRD35Q8N283 1001 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 IGSF22Q8N9C0 903 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 TRIML1Q8N9V2 468 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 GIMAP8Q8ND71 665 aaPredicted RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 GPRC5AQ8NFJ5 357 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 ELOA3Q8NG57 546 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 NEK9Q8TD19 979 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 SMCR8Q8TEV9 937 aaPredicted RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 FAM193BQ96PV7 902 aaPredicted RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 MTMR9Q96QG7 549 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 PARK7Q99497 189 aaKnown RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 P2RX7Q99572 595 aaKnown RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 RIT2Q99578 217 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 MDFIQ99750 246 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 MXRA8Q9BRK3 442 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 LGR4Q9BXB1 951 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 WDR11Q9BZH6 1224 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 FOXQ1Q9C009 403 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 SPATC1LQ9H0A9 340 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 CSRNP2Q9H175 543 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 TSPY26PQ9H489 355 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 GPR27Q9NS67 375 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 RNF146Q9NTX7 359 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 TBC1D22BQ9NU19 505 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 FBXO28Q9NVF7 368 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 RMND1Q9NWS8 449 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 THG1LQ9NWX6 298 aaKnown RBP5.65□□□□□ -1.5
LDLR-209ENST00000558528 CRIM1Q9NZV1 1036 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 LUZP4Q9P127 313 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 STK17AQ9UEE5 414 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 LRWD1Q9UFC0 647 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 FBXL21Q9UKT6 434 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 TRAF6Q9Y4K3 522 aa5.65□□□□□ -1.5
LDLR-209ENST00000558528 BAZ2AQ9UIF9 1905 aaKnown RBP5.65□□□□□ -1.51
LDLR-209ENST00000558528 ZNF536O15090 1300 aa5.65□□□□□ -1.51
LDLR-209ENST00000558528 KDM3AQ9Y4C1 1321 aa5.65□□□□□ -1.51
LDLR-209ENST00000558528 MUC6Q6W4X9 2439 aa5.65□□□□□ -1.51
LDLR-209ENST00000558528 FOCADQ5VW36 1801 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 CCL15-CCL14A0A0B4J2E2 113 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 KLHL33A6NCF5 533 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 SOBPA7XYQ1 873 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 SMTNL1A8MU46 457 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 MEIS1O00470 390 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 PMM2O15305 246 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 POLR2DO15514 142 aaKnown RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 OFD1O75665 1012 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 LRIG2O94898 1065 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 HRGP04196 525 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 CTSBP07858 339 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 TGFB3P10600 412 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 CCND2P30279 289 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 CDC25BP30305 580 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 NTF4P34130 210 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 ETV3P41162 512 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms