RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RBBP8NLQ8NC74 664 aaPredicted RBP13.68□□□□□ -0.22
LDLR-207ENST00000558013 SPOCK2Q92563 424 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 TBC1D31Q96DN5 1066 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 FAM212AQ96EL1 285 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 PLVAPQ9BX97 442 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 FER1L6Q2WGJ9 1857 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 SPAG7O75391 227 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 ELF3P78545 371 aaPredicted RBP13.68□□□□□ -0.22
LDLR-207ENST00000558013 PTP4A2Q12974 167 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 PRKG1Q13976 671 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 PSMD6Q15008 389 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 ZNF365Q70YC5 407 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 ABRAQ8N0Z2 381 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 GPATCH11Q8N954 259 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 PAIP2Q9BPZ3 127 aaKnown RBP13.68□□□□□ -0.22
LDLR-207ENST00000558013 TRAIPQ9BWF2 469 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 AVENQ9NQS1 362 aaPredicted RBP13.68□□□□□ -0.22
LDLR-207ENST00000558013 IVNS1ABPQ9Y6Y0 642 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 KIAA1217Q5T5P2 1943 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 GSTTP1A0A1W2PQM5 241 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 BACE1P56817 501 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 OGDHQ02218 1023 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 ZNF252P-AS1Q0IIN9 211 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 CIAPIN1Q6FI81 312 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 CGB2Q6NT52 195 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 MIS18BP1Q6P0N0 1132 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 MFSD7Q6UXD7 560 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 DLK2Q6UY11 383 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 FAM47EQ6ZV65 393 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 ZBTB33Q86T24 672 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 USP37Q86T82 979 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 SLC17A8Q8NDX2 589 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 MCPH1Q8NEM0 835 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 NSUN6Q8TEA1 469 aaKnown RBP13.68□□□□□ -0.22
LDLR-207ENST00000558013 GPRASP2Q96D09 838 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 SERPINB12Q96P63 405 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 RBM15Q96T37 977 aaKnown RBP eCLIP13.68□□□□□ -0.228e-8■■■■□ 25
LDLR-207ENST00000558013 MSTO1Q9BUK6 570 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 ROPN1BQ9BZX4 212 aaPredicted RBP13.68□□□□□ -0.22
LDLR-207ENST00000558013 CCDC134Q9H6E4 229 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 ROPN1Q9HAT0 212 aaPredicted RBP13.68□□□□□ -0.22
LDLR-207ENST00000558013 HOMER3Q9NSC5 361 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 SLC12A4Q9UP95 1085 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.68□□□□□ -0.22
LDLR-207ENST00000558013 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.68□□□□□ -0.22
LDLR-207ENST00000558013 GOLGA8SH3BPF8 625 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 GOLGA8MH3BSY2 632 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 K7ERI5 159 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 NOP14P78316 857 aaKnown RBP13.67□□□□□ -0.22
LDLR-207ENST00000558013 GAD2Q05329 585 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 REPS2Q8NFH8 660 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 RMDN2Q96LZ7 410 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 CYP39A1Q9NYL5 469 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 BAIAP2L1Q9UHR4 511 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 HACL1Q9UJ83 578 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 SNCBQ16143 134 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 CDR2LQ86X02 465 aaPredicted RBP13.67□□□□□ -0.22
LDLR-207ENST00000558013 RHOT1Q8IXI2 618 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 ZNF606Q8WXB4 792 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 TJP2Q9UDY2 1190 aa13.67□□□□□ -0.22
LDLR-207ENST00000558013 CHUKO15111 745 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 BRD2P25440 801 aaKnown RBP13.66□□□□□ -0.22
LDLR-207ENST00000558013 FOXN2P32314 431 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 SLC1A1P43005 524 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 CLDN10P78369 228 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 NFX1Q12986 1120 aaKnown RBP13.66□□□□□ -0.22
LDLR-207ENST00000558013 STRN3Q13033 797 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 TMED2Q15363 201 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 CYP4A22Q5TCH4 519 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 DNAH12Q6ZR08 3092 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 MCEEQ96PE7 176 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 WRNIP1Q96S55 665 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 STMN4Q9H169 189 aaPredicted RBP13.66□□□□□ -0.22
LDLR-207ENST00000558013 C17orf75Q9HAS0 396 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 WEE2P0C1S8 567 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 KLRC2P26717 231 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 MGAT5Q09328 741 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 ITIH4Q14624 930 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 CCNG2Q16589 344 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 SCARA5Q6ZMJ2 495 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 ENOSF1Q7L5Y1 443 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 EEPD1Q7L9B9 569 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 FITM2Q8N6M3 262 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 ZBTB10Q96DT7 871 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 TGS1Q96RS0 853 aaKnown RBP13.66□□□□□ -0.22
LDLR-207ENST00000558013 SENP7Q9BQF6 1050 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 SAYSD1Q9NPB0 183 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 MAP3K20Q9NYL2 800 aaKnown RBP13.66□□□□□ -0.22
LDLR-207ENST00000558013 ZNF148Q9UQR1 794 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 A8MUI8 341 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 POC1B-GALNT4F8VUJ3 575 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 DNAJC8O75937 253 aaPredicted RBP13.66□□□□□ -0.22
LDLR-207ENST00000558013 OAS1P00973 400 aaKnown RBP13.66□□□□□ -0.22
LDLR-207ENST00000558013 GCAP28676 217 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 NCOA4Q13772 614 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 PLEKHA7Q6IQ23 1121 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 DEPTORQ8TB45 409 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 R3HDMLQ9H3Y0 253 aa13.66□□□□□ -0.22
LDLR-207ENST00000558013 USP15Q9Y4E8 981 aaPredicted RBP13.66□□□□□ -0.22
LDLR-207ENST00000558013 GJA3Q9Y6H8 435 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms