RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 VPS52Q8N1B4 723 aa22.89■■□□□ 1.25
CASC4-204ENST00000557945 POF1BQ8WVV4 589 aa22.89■■□□□ 1.25
CASC4-204ENST00000557945 FAM161BQ96MY7 647 aa22.89■■□□□ 1.25
CASC4-204ENST00000557945 VN1R3Q9BXE9 311 aa22.89■■□□□ 1.25
CASC4-204ENST00000557945 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.89■■□□□ 1.253e-10■■■■■ 130.4
CASC4-204ENST00000557945 LZTS1Q9Y250 596 aa22.89■■□□□ 1.25
CASC4-204ENST00000557945 KPNA7A9QM74 516 aa22.88■■□□□ 1.25
CASC4-204ENST00000557945 ATP1A3P13637 1013 aa22.88■■□□□ 1.25
CASC4-204ENST00000557945 UBE3AQ05086 875 aa22.88■■□□□ 1.25
CASC4-204ENST00000557945 CETN1Q12798 172 aa22.88■■□□□ 1.25
CASC4-204ENST00000557945 ZNF699Q32M78 642 aa22.88■■□□□ 1.25
CASC4-204ENST00000557945 VWA3BQ502W6 1294 aa22.88■■□□□ 1.25
CASC4-204ENST00000557945 TAS1R1Q7RTX1 841 aa22.88■■□□□ 1.25
CASC4-204ENST00000557945 CEP57Q86XR8 500 aa22.88■■□□□ 1.25
CASC4-204ENST00000557945 FBXL13Q8NEE6 735 aa22.88■■□□□ 1.25
CASC4-204ENST00000557945 PRDM12Q9H4Q4 367 aa22.88■■□□□ 1.25
CASC4-204ENST00000557945 SOD2P04179 222 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 PAX3P23760 479 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 ATICP31939 592 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 GRIN2CQ14957 1233 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 SGSM1Q2NKQ1 1148 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 KIAA1841Q6NSI8 718 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 CCDC150Q8NCX0 1101 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 ELMO3Q96BJ8 720 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 SUSD3Q96L08 255 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 B3GALT6Q96L58 329 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 SENP8Q96LD8 212 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 PI4K2AQ9BTU6 479 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 IMPG2Q9BZV3 1241 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 VPS16Q9H269 839 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 NDST4Q9H3R1 872 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 RAB20Q9NX57 234 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 STK39Q9UEW8 545 aa22.87■■□□□ 1.25
CASC4-204ENST00000557945 LIMA1Q9UHB6 759 aaKnown RBP22.87■■□□□ 1.25
CASC4-204ENST00000557945 SCN1AP35498 2009 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 CYB561D2O14569 222 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 DNAJB1P25685 340 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 CA8P35219 290 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 AARSP49588 968 aaKnown RBP eCLIP22.86■■□□□ 1.25
CASC4-204ENST00000557945 USP41Q3LFD5 358 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 MIIPQ5JXC2 388 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 MICAL1Q8TDZ2 1067 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 SEMA4DQ92854 862 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 HERC2P3Q9BVR0 1158 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 XYLT2Q9H1B5 865 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 NXF1Q9UBU9 619 aaKnown RBP22.86■■□□□ 1.25
CASC4-204ENST00000557945 PCDHB8Q9UN66 801 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 SNX9Q9Y5X1 595 aa22.86■■□□□ 1.25
CASC4-204ENST00000557945 P4HA2O15460 535 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 COPB1P53618 953 aaKnown RBP22.85■■□□□ 1.25
CASC4-204ENST00000557945 TNNC1P63316 161 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 BMS1Q14692 1282 aaKnown RBP22.85■■□□□ 1.25
CASC4-204ENST00000557945 WDR72Q3MJ13 1102 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.85■■□□□ 1.25
CASC4-204ENST00000557945 TMC7Q7Z402 723 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 TAF4BQ92750 862 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 TCF25Q9BQ70 676 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 TTPALQ9BTX7 342 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 ENTPD7Q9NQZ7 604 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 TLR9Q9NR96 1032 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 COQ4Q9Y3A0 265 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 MYO9BQ13459 2157 aa22.85■■□□□ 1.25
CASC4-204ENST00000557945 ARHGEF37A1IGU5 675 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 M0QZQ0 153 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 C2CD2LO14523 706 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 PMM2O15305 246 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 LRRN2O75325 713 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 STAU1O95793 577 aaKnown RBP22.84■■□□□ 1.25
CASC4-204ENST00000557945 EFEMP2O95967 443 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 ASS1P00966 412 aaKnown RBP22.84■■□□□ 1.25
CASC4-204ENST00000557945 URODP06132 367 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 ODC1P11926 461 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 TKTP29401 623 aaKnown RBP22.84■■□□□ 1.25
CASC4-204ENST00000557945 GLUD2P49448 558 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 ERVFC1P60507 584 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 ZNF667Q5HYK9 610 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 WDR44Q5JSH3 913 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 SPOPLQ6IQ16 392 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 GPR153Q6NV75 609 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 RNF168Q8IYW5 571 aaPredicted RBP22.84■■□□□ 1.25
CASC4-204ENST00000557945 MMS19Q96T76 1030 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 LMAN2LQ9H0V9 348 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 ZBP1Q9H171 429 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 TIMM13Q9Y5L4 95 aaPredicted RBP22.84■■□□□ 1.25
CASC4-204ENST00000557945 PLXNA4Q9HCM2 1894 aa22.84■■□□□ 1.25
CASC4-204ENST00000557945 SYN3O14994 580 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 HUS1O60921 280 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 FGFR3P22607 806 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 FXR1P51114 621 aaKnown RBP eCLIP22.83■■□□□ 1.25
CASC4-204ENST00000557945 NOP14P78316 857 aaKnown RBP22.83■■□□□ 1.25
CASC4-204ENST00000557945 PTPROQ16827 1216 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 RTP2Q5QGT7 225 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 PLPP4Q5VZY2 271 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 Q7L0L9 218 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 APPL2Q8NEU8 664 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 AUTS2Q8WXX7 1259 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 RIN2Q8WYP3 895 aaPredicted RBP22.83■■□□□ 1.25
CASC4-204ENST00000557945 CRACR2AQ9BSW2 395 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 GDAP2Q9NXN4 497 aa22.83■■□□□ 1.25
CASC4-204ENST00000557945 POLIQ9UNA4 740 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms