RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 ZBTB6Q15916 424 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 ENOX2Q16206 610 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 FAM78AQ5JUQ0 283 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 ZBTB41Q5SVQ8 909 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 TPRG1Q6ZUI0 275 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 BRAPQ7Z569 592 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 HS6ST3Q8IZP7 471 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 TMEM130Q8N3G9 435 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 LEMD2Q8NC56 503 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 LRRC15Q8TF66 581 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 RAD54LQ92698 747 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 FAM212AQ96EL1 285 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 TSPAN18Q96SJ8 248 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 NELL2Q99435 816 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 MSTO1Q9BUK6 570 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 LTB4R2Q9NPC1 389 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 ASAH2Q9NR71 780 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 BLOC1S4Q9NUP1 217 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 SPATA6Q9NWH7 488 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 CEP72Q9P209 647 aa12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 MTF2Q9Y483 593 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-213ENST00000557455 NCAM2O15394 837 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 LAMTOR5O43504 91 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 FAM189A1O60320 539 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 TBCAO75347 108 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 MYL4P12829 197 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 PLCG1P19174 1290 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 FCARP24071 287 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 ABCD1P33897 745 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 MAGEA9P43362 315 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 GUCY2FP51841 1108 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 GRIN1Q05586 938 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 GRM2Q14416 872 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 KARSQ15046 597 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 SF3A1Q15459 793 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 ZNF852Q6ZMS4 543 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 CD302Q8IX05 232 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 BEST2Q8NFU1 509 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 LARP4BQ92615 738 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 DNASE1L2Q92874 299 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 SMARCD2Q92925 531 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 ASB16Q96NS5 453 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 PGLYRP2Q96PD5 576 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 TRMT61BQ9BVS5 477 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 BRD9Q9H8M2 597 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 HEBP1Q9NRV9 189 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 MRPS17Q9Y2R5 130 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 ZNF292O60281 2723 aa12.03□□□□□ -0.48
CCDC88C-213ENST00000557455 TSC2P49815 1807 aa12.02□□□□□ -0.48
CCDC88C-213ENST00000557455 A0A0B4J269 797 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 OR6C75A6NL08 312 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 ADRB2P07550 413 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 OR4Q2P0C623 313 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 ODC1P11926 461 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 GJA1P17302 382 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 TARSP26639 723 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 NMT1P30419 496 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 AARSP49588 968 aaKnown RBP eCLIP12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 EPHB3P54753 998 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 EPHA5P54756 1037 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 GTF2BQ00403 316 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 GPR17Q13304 367 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 PLD1Q13393 1074 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 ZNF528Q3MIS6 628 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 SPATA1Q5VX52 437 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 OVOS1Q6IE37 1185 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 JADE1Q6IE81 842 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 MAML2Q8IZL2 1156 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 IRF7Q92985 503 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 ZSWIM3Q96MP5 696 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 GPR88Q9GZN0 384 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 CPSF3Q9UKF6 684 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 FBXO4Q9UKT5 387 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 YIPF1Q9Y548 306 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 SCN1AP35498 2009 aa12.02□□□□□ -0.49
CCDC88C-213ENST00000557455 GVINP1Q7Z2Y8 2422 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 COL4A2P08572 1712 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 VPS37CA5D8V6 355 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 ANKRD63C9JTQ0 380 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 MAN2B1O00754 1011 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 NRG2O14511 850 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 PPEF2O14830 753 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 KINO60870 393 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 MOSPD3O75425 235 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 PSMC3P17980 439 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 TYMPP19971 482 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 PAX3P23760 479 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 GDI1P31150 447 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 DDIT3P35638 169 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 ALDH1A3P47895 512 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 ID4P47928 161 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 LILRA4P59901 499 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 CSTF1Q05048 431 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 DUSP4Q13115 394 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 TMEM132DQ14C87 1099 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 TEAD2Q15562 447 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 ZC2HC1CQ53FD0 456 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 ADALQ6DHV7 355 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 ARMCX5Q6P1M9 558 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 SLC39A4Q6P5W5 647 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms