RNA–Protein interactions for RNA: ENST00000556971.1

ABCD4-226, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 637 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-226	ENST00000556971	PTPRN	Q16849	979 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	TRIM68	Q6AZZ1	485 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	ITPRIP	Q8IWB1	547 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	BPIFB1	Q8TDL5	484 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	NANOS1	Q8WY41	292 aa	Known RBP	13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	NLRP4	Q96MN2	994 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	MXRA8	Q9BRK3	442 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	POLR3C	Q9BUI4	534 aa	Predicted RBP	13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	INO80B	Q9C086	356 aa	Predicted RBP	13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	GPR88	Q9GZN0	384 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	NRSN2	Q9GZP1	204 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	CYP4F11	Q9HBI6	524 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	CEP72	Q9P209	647 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	MAFB	Q9Y5Q3	323 aa	Predicted RBP	13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	OTOG	Q6ZRI0	2925 aa		13.56	□□□□□ -0.24
ABCD4-226	ENST00000556971	ABCA2	Q9BZC7	2435 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	CASTOR2	A6NHX0	329 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	SEC24A	O95486	1093 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	PRAMEF12	O95522	483 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	HNRNPL	P14866	589 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	EPHA5	P54756	1037 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	ROR1	Q01973	937 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	UBE2S	Q16763	222 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	IQCA1	Q86XH1	822 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	ZNF248	Q8NDW4	579 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	EIF2A	Q9BY44	585 aa	Known RBP	13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	EBF3	Q9H4W6	596 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	RIOX1	Q9H6W3	641 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	ECHDC1	Q9NTX5	307 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	FNDC3A	Q9Y2H6	1198 aa	Known RBP	13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	SPEN	Q96T58	3664 aa	Known RBP	13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	ARID2	Q68CP9	1835 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971	KNL1	Q8NG31	2342 aa		13.55	□□□□□ -0.24
ABCD4-226	ENST00000556971		A0A1W2PQD8	194 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	ANTXRL	A6NF34	631 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	FLRT2	O43155	660 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	RAB11FIP3	O75154	756 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	ALDH1A2	O94788	518 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	FGA	P02671	866 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	MCM2	P49736	904 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	SEC13	P55735	322 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	TARDBP	Q13148	414 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	RUNX3	Q13761	415 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	KSR1	Q8IVT5	923 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	CCDC33	Q8N5R6	958 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	LEMD2	Q8NC56	503 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	GSTCD	Q8NEC7	633 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	ZNF512	Q96ME7	567 aa	Predicted RBP	13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	GKN1	Q9NS71	199 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	TM7SF3	Q9NS93	570 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	STARD5	Q9NSY2	213 aa		13.54	□□□□□ -0.24
ABCD4-226	ENST00000556971	TNFSF14	O43557	240 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	HOXA11	P31270	313 aa	Predicted RBP	13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	TWF1	Q12792	350 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	GRIK3	Q13003	919 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	ALX1	Q15699	326 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	CRY1	Q16526	586 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	CCDC178	Q5BJE1	867 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	TMEM92	Q6UXU6	159 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	ZNF410	Q86VK4	478 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	RHPN2	Q8IUC4	686 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	SLC41A1	Q8IVJ1	513 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	SNRNP27	Q8WVK2	155 aa	Known RBP	13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	FAM167A	Q96KS9	214 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	OBP2A	Q9NY56	170 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	GABBR1	Q9UBS5	961 aa		13.53	□□□□□ -0.24
ABCD4-226	ENST00000556971	CILP	O75339	1184 aa		13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	ARSA	P15289	507 aa		13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	ARPP19	P56211	112 aa		13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	PCBP4	P57723	403 aa	Known RBP	13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	ELAVL2	Q12926	359 aa	Known RBP	13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	USP49	Q70CQ1	688 aa		13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	FAM9B	Q8IZU0	186 aa		13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	CNNM3	Q8NE01	707 aa		13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	ZNF461	Q8TAF7	563 aa		13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	USP33	Q8TEY7	942 aa		13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	HMGB4	Q8WW32	186 aa		13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	HSPA12B	Q96MM6	686 aa		13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	SMG9	Q9H0W8	520 aa	Known RBP	13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	THG1L	Q9NWX6	298 aa	Known RBP	13.52	□□□□□ -0.25
ABCD4-226	ENST00000556971	ANO9	A1A5B4	782 aa		13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	SPDYE3	A6NKU9	549 aa		13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	SMARCA5	O60264	1052 aa	Predicted RBP	13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	OAT	P04181	439 aa		13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	PC	P11498	1178 aa	Known RBP	13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	FGFR3	P22607	806 aa		13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	GRN	P28799	593 aa	Known RBP	13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	TCEAL8	Q8IYN2	117 aa		13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	RGL4	Q8IZJ4	473 aa		13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	TRIML1	Q8N9V2	468 aa		13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	DDX27	Q96GQ7	796 aa	Known RBP	13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	POM121	Q96HA1	1249 aa		13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	ZDHHC5	Q9C0B5	715 aa		13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	NXF3	Q9H4D5	531 aa	Known RBP	13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	GAREM1	Q9H706	876 aa		13.51	□□□□□ -0.25
ABCD4-226	ENST00000556971	KLK14	Q9P0G3	267 aa		13.51	□□□□□ -0.25

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