RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 PIK3R5Q8WYR1 880 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 SENP8Q96LD8 212 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 MMRN2Q9H8L6 949 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 RXFP1Q9HBX9 757 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 BARX2Q9UMQ3 279 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 COG5Q9UP83 839 aa12.35□□□□□ -0.43
CCDC88C-212ENST00000556767 ARHGEF37A1IGU5 675 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 KPNA7A9QM74 516 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 H7C4K7 107 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 CYB561D2O14569 222 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 MAPK13O15264 365 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 SPTLC1O15269 473 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 TRIM49P0CI25 452 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 TRIM49CP0CI26 452 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 ODC1P11926 461 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 EPCAMP16422 314 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 PAX3P23760 479 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 AP3M2P53677 418 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 NLRP12P59046 1061 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 TFF2Q03403 129 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 YWHAHQ04917 246 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 MYO1EQ12965 1108 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 CLUL1Q15846 466 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 CCDC40Q4G0X9 1142 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 CTXN3Q4LDR2 81 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 CCDC183Q5T5S1 534 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 ZNF280DQ6N043 979 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 METTL23Q86XA0 190 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 GPR65Q8IYL9 337 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 MLKLQ8NB16 471 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 TMC2Q8TDI7 906 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 ZNF516Q92618 1163 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 CASP10Q92851 521 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 HPDLQ96IR7 371 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 MKNK1Q9BUB5 465 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 DACH1Q9UI36 760 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 HCFC2Q9Y5Z7 792 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 CDY1Q9Y6F8 540 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 SZT2Q5T011 3432 aa12.34□□□□□ -0.43
CCDC88C-212ENST00000556767 VWA8A3KMH1 1905 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 M0QZQ0 153 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 HUS1O60921 280 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 TBX10O75333 385 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 GLUD1P00367 558 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 SPATA31D3P0C874 917 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 OR1D2P34982 312 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 AARSP49588 968 aaKnown RBP eCLIP12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 DLX2Q07687 328 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 TPD52L1Q16890 204 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 CTC1Q2NKJ3 1217 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 DPCR1Q3MIW9 517 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 DCAF17Q5H9S7 520 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 TCERG1LQ5VWI1 586 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 SCARA3Q6AZY7 606 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 TTI2Q6NXR4 508 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 SASS6Q6UVJ0 657 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 SPATA31D4Q6ZUB0 917 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 CREBRFQ8IUR6 639 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 LRRC52Q8N7C0 313 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 VN1R2Q8NFZ6 395 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 SYAP1Q96A49 352 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 CLSTN3Q9BQT9 956 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 APOL5Q9BWW9 433 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 GZF1Q9H116 711 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 FNIP2Q9P278 1114 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 MTRRQ9UBK8 725 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 SIX4Q9UIU6 781 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 SNX9Q9Y5X1 595 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 BACE2Q9Y5Z0 518 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 SCN1AP35498 2009 aa12.33□□□□□ -0.44
CCDC88C-212ENST00000556767 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 SLC16A3O15427 465 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 ADAM12O43184 909 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 FGFR1OPO95684 399 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 GLP2RO95838 553 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 CST3P01034 146 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 TYMPP19971 482 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 PTMSP20962 102 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 LTBRP36941 435 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 GCLMP48507 274 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 CLCN4P51793 760 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 MYL6P60660 151 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 AAK1Q2M2I8 961 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 TDRD10Q5VZ19 366 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 WSCD1Q658N2 575 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 OVOS1Q6IE37 1185 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 ANKRD54Q6NXT1 300 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 CAVIN1Q6NZI2 390 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 ELMSAN1Q6PJG2 1045 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 THEM5Q8N1Q8 247 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 CXorf38Q8TB03 319 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 SLC22A17Q8WUG5 538 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 CEP63Q96MT8 703 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 DUSP9Q99956 384 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 SRRTQ9BXP5 876 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 CLEC1BQ9P126 229 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 ARMCX3Q9UH62 379 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 RWDD2AQ9UIY3 292 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 CD207Q9UJ71 328 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms