RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 TRPC3Q13507 836 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 SMC1AQ14683 1233 aaKnown RBP11.75□□□□□ -0.53
SHMT2-218ENST00000555213 SV2CQ496J9 727 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 DCAF17Q5H9S7 520 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-218ENST00000555213 C1orf220Q5T0J3 134 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 TCERG1LQ5VWI1 586 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 C9orf57Q5W0N0 161 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 PDXDC1Q6P996 788 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 TMC7Q7Z402 723 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 TMC6Q7Z403 805 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 CREBRFQ8IUR6 639 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 VPS52Q8N1B4 723 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 SPPL3Q8TCT6 385 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 PLEKHO2Q8TD55 490 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 PARD3BQ8TEW8 1205 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 HASPINQ8TF76 798 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 BCL7CQ8WUZ0 217 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-218ENST00000555213 RABGGTAQ92696 567 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 ZNF830Q96NB3 372 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-218ENST00000555213 CDX2Q99626 313 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-218ENST00000555213 PAAF1Q9BRP4 392 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 HERC2P3Q9BVR0 1158 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 KCNF1Q9H3M0 494 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 NGRNQ9NPE2 291 aaKnown RBP11.75□□□□□ -0.53
SHMT2-218ENST00000555213 LMCD1Q9NZU5 365 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 MAGEC2Q9UBF1 373 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-218ENST00000555213 CACNG4Q9UBN1 327 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 LRRIQ3A6PVS8 624 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-218ENST00000555213 ITGB3P05106 788 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 POLR2BP30876 1174 aaKnown RBP11.74□□□□□ -0.53
SHMT2-218ENST00000555213 MTIF2P46199 727 aaKnown RBP11.74□□□□□ -0.53
SHMT2-218ENST00000555213 TAF6P49848 677 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 WNT7BP56706 349 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 CLDN10P78369 228 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 MAN2A1Q16706 1144 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 USP41Q3LFD5 358 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 HS1BP3Q53T59 392 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 FAM171A1Q5VUB5 890 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 LMBRD2Q68DH5 695 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-218ENST00000555213 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-218ENST00000555213 LRRC52Q8N7C0 313 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 C1orf127Q8N9H9 656 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 ERGIC2Q96RQ1 377 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 IMPG2Q9BZV3 1241 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 NDST4Q9H3R1 872 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 MRPL17Q9NRX2 175 aaKnown RBP11.74□□□□□ -0.53
SHMT2-218ENST00000555213 MTMR10Q9NXD2 777 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 IMPACTQ9P2X3 320 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 AGAP1Q9UPQ3 857 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 SIK3Q9Y2K2 1263 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 PTPRJQ12913 1337 aa11.74□□□□□ -0.53
SHMT2-218ENST00000555213 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-218ENST00000555213 A0A1W2PQC6 194 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 ANO9A1A5B4 782 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 F8W810 466 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 RFXAPO00287 272 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 PIRO00625 290 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 SYN3O14994 580 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 N4BP1O75113 896 aaKnown RBP11.73□□□□□ -0.53
SHMT2-218ENST00000555213 TRIM49P0CI25 452 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 TRIM49CP0CI26 452 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 CTSAP10619 480 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 ODC1P11926 461 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 PRKCSHP14314 528 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-218ENST00000555213 GTF2H1P32780 548 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 KLK7P49862 253 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 MXI1P50539 228 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 UBXN1Q04323 297 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 GOLGA8FQ08AF8 430 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 GOLGA8DPQ0D2H9 430 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 PDCD11Q14690 1871 aaKnown RBP11.73□□□□□ -0.53
SHMT2-218ENST00000555213 FILIP1LQ4L180 1135 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 PLPP4Q5VZY2 271 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 SPECC1LQ69YQ0 1117 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 ITIH6Q6UXX5 1313 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 DSTYKQ6XUX3 929 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 TRAPPC11Q7Z392 1133 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 CEP57Q86XR8 500 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 DRC7Q8IY82 874 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 CCDC150Q8NCX0 1101 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 C3orf58Q8NDZ4 430 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 APPL2Q8NEU8 664 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 OR5B17Q8NGF7 314 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 MYLIPQ8WY64 445 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 SLC35C1Q96A29 364 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 SUSD3Q96L08 255 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 GUCD1Q96NT3 240 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 POP1Q99575 1024 aaKnown RBP11.73□□□□□ -0.53
SHMT2-218ENST00000555213 TTPALQ9BTX7 342 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 EMILIN2Q9BXX0 1053 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 ZBP1Q9H171 429 aa11.73□□□□□ -0.53
SHMT2-218ENST00000555213 NSUN3Q9H649 340 aaKnown RBP11.73□□□□□ -0.53
SHMT2-218ENST00000555213 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.73□□□□□ -0.53
SHMT2-218ENST00000555213 LAMA3Q16787 3333 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 FSCN2O14926 492 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 POU3F3P20264 500 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-218ENST00000555213 PIK3CAP42336 1068 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 LILRA4P59901 499 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 DLG4P78352 724 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 DSG1Q02413 1049 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms