RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 EIF3DO15371 548 aaKnown RBP eCLIP11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 TGFB1I1O43294 461 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 KLRC4O43908 158 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 LDHAP00338 332 aaKnown RBP11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 PAX3P23760 479 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 CTXN3Q4LDR2 81 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 PPM1LQ5SGD2 360 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 LIN9Q5TKA1 542 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 SCARA3Q6AZY7 606 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 TRIM67Q6ZTA4 783 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 STXBP4Q6ZWJ1 553 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 RTL10Q7L3V2 364 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 SLC7A14Q8TBB6 771 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 BORCS6Q96GS4 357 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 MYADMQ96S97 322 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 SCAND2PQ9GZW5 306 aaPredicted RBP11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 PCIF1Q9H4Z3 704 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 DPP3Q9NY33 737 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 ATP6V1DQ9Y5K8 247 aa11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 TIMM13Q9Y5L4 95 aaPredicted RBP11.13□□□□□ -0.63
CCDC88C-206ENST00000553437 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 A0A1W2PQ27 194 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 A0A1W2PQ64 194 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 A0A1W2PQD8 194 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 ARHGEF37A1IGU5 675 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 KIAA0391O15091 583 aaKnown RBP11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 CCL16O15467 120 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 SEC24AO95486 1093 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 ASGR2P07307 311 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 ATF2P15336 505 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 TYMPP19971 482 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 NDUFA8P51970 172 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 ARPP19P56211 112 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 NTHL1P78549 312 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 BMT2Q1RMZ1 405 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 LCE2DQ5TA82 110 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 TPGS2Q68CL5 300 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 ZNF280DQ6N043 979 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 ARMCX5Q6P1M9 558 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 DSTYKQ6XUX3 929 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 GRASPQ7Z6J2 395 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 NT5DC4Q86YG4 428 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 TCEAL8Q8IYN2 117 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 CEP57L1Q8IYX8 460 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 CXorf38Q8TB03 319 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 ACSF2Q96CM8 615 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 ASIC4Q96FT7 647 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 FAM84AQ96KN4 292 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 SENP8Q96LD8 212 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 PIDD1Q9HB75 910 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 SLC39A2Q9NP94 309 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 RBAKQ9NYW8 714 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 EPS15L1Q9UBC2 864 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 USP25Q9UHP3 1055 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 HCN4Q9Y3Q4 1203 aa11.12□□□□□ -0.63
CCDC88C-206ENST00000553437 TMEM221A6NGB7 291 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 M0R296 226 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 VNN2O95498 520 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 CYP11A1P05108 521 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 YWHAHQ04917 246 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 STK4Q13043 487 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 HFE2Q6ZVN8 426 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 BMP8AQ7Z5Y6 402 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 CBWD2Q8IUF1 395 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 NELFCDQ8IXH7 590 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 GPD1LQ8N335 351 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 C1orf127Q8N9H9 656 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 OXCT2Q9BYC2 517 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 SMOC2Q9H3U7 446 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 GOLPH3LQ9H4A5 285 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 GDPD2Q9HCC8 539 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 PDE11AQ9HCR9 933 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 AGPAT3Q9NRZ7 376 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 HCFC1R1Q9NWW0 138 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 HSPBP1Q9NZL4 362 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 DNMT3BQ9UBC3 853 aaKnown RBP11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 AFF4Q9UHB7 1163 aaKnown RBP11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 MAFFQ9ULX9 164 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 SORCS3Q9UPU3 1222 aa11.11□□□□□ -0.63
CCDC88C-206ENST00000553437 UBE4BO95155 1302 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 PLXNA3P51805 1871 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 MYH11P35749 1972 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 VWA8A3KMH1 1905 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 MYH15Q9Y2K3 1946 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 ZNF233A6NK53 670 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 OR6C75A6NL08 312 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 CLIC2O15247 247 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 XYLBO75191 536 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 OR4Q2P0C623 313 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 LAMP2P13473 410 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 FSHRP23945 695 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 GBP2P32456 591 aaPredicted RBP11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 SYKP43405 635 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 TAF6P49848 677 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 SNRPFP62306 86 aaKnown RBP11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 NUCB2P80303 420 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 TFAMQ00059 246 aaKnown RBP11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 SIGLEC14Q08ET2 396 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 GPR17Q13304 367 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 MTMR3Q13615 1198 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms