RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ASPAP45381 313 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 TM4SF4P48230 202 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 SLC10A6Q3KNW5 377 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 MON1BQ7L1V2 547 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 PHF13Q86YI8 300 aaPredicted RBP28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 CD302Q8IX05 232 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 CPA5Q8WXQ8 436 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 KRT12Q99456 494 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 NAP1L3Q99457 506 aaPredicted RBP28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 SIX4Q9UIU6 781 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 MROH7Q68CQ1 1323 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 TMEM110-MUSTN1A8MSY1 372 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 CTNNA2P26232 953 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 GRM5P41594 1212 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 PLA2G4AP47712 749 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 ADAM17P78536 824 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 KIZQ2M2Z5 673 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 LIN9Q5TKA1 542 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 C1orf127Q8N9H9 656 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 ZNF606Q8WXB4 792 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 CD101Q93033 1021 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 ACAP3Q96P50 834 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 ZSWIM1Q9BR11 485 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 KATNAL1Q9BW62 490 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 ZMYND10O75800 440 aa28.09■■■□□ 2.09
CCDC88C-205ENST00000553403 CYP2C9P11712 490 aa28.09■■■□□ 2.09
CCDC88C-205ENST00000553403 CBX1P83916 185 aa28.09■■■□□ 2.09
CCDC88C-205ENST00000553403 DCAF12L1Q5VU92 463 aa28.09■■■□□ 2.09
CCDC88C-205ENST00000553403 LENG1Q96BZ8 264 aaPredicted RBP28.09■■■□□ 2.09
CCDC88C-205ENST00000553403 ZIC5Q96T25 663 aa28.09■■■□□ 2.09
CCDC88C-205ENST00000553403 FAM49AQ9H0Q0 323 aaPredicted RBP28.09■■■□□ 2.09
CCDC88C-205ENST00000553403 VRTNQ9H8Y1 702 aa28.09■■■□□ 2.09
CCDC88C-205ENST00000553403 CHORDC1Q9UHD1 332 aaPredicted RBP28.09■■■□□ 2.09
CCDC88C-205ENST00000553403 C2CD2Q9Y426 696 aa28.09■■■□□ 2.09
CCDC88C-205ENST00000553403 KRIT1O00522 736 aa28.08■■■□□ 2.09
CCDC88C-205ENST00000553403 MYL3P08590 195 aa28.08■■■□□ 2.09
CCDC88C-205ENST00000553403 C1QBPQ07021 282 aaKnown RBP28.08■■■□□ 2.09
CCDC88C-205ENST00000553403 ZNF667Q5HYK9 610 aa28.08■■■□□ 2.09
CCDC88C-205ENST00000553403 BCO2Q9BYV7 579 aa28.08■■■□□ 2.09
CCDC88C-205ENST00000553403 LSM8O95777 96 aaKnown RBP28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 KRT19P08727 400 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 SLC7A5Q01650 507 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 TMEM132DQ14C87 1099 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 IFT20Q8IY31 132 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 CXorf38Q8TB03 319 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 ALG3Q92685 438 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 RNPC3Q96LT9 517 aaKnown RBP28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 GDF3Q9NR23 364 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 CCDC66A2RUB6 948 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 CFHP08603 1231 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 CD58P19256 250 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 RRM1P23921 792 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 ADAM22Q9P0K1 906 aa28.07■■■□□ 2.08
CCDC88C-205ENST00000553403 MGAMO43451 1857 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 AKR1A1P14550 325 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 DARSP14868 501 aaKnown RBP28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 CTNNA1P35221 906 aaKnown RBP28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 PEX5P50542 639 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 CASP8Q14790 479 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 PPP2R5EQ16537 467 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 RUFY4Q6ZNE9 571 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 CATSPER4Q7RTX7 472 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 UBXN6Q9BZV1 441 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 ZNF518BQ9C0D4 1074 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 PLEKHA5Q9HAU0 1116 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 ITGA11Q9UKX5 1188 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 PCDHGC3Q9UN70 934 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 PCDHA3Q9Y5H8 950 aa28.06■■■□□ 2.08
CCDC88C-205ENST00000553403 SPOPO43791 374 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 STAU1O95793 577 aaKnown RBP28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 FGGP02679 453 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 ITGB3P05106 788 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 WEE2P0C1S8 567 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 AXLP30530 894 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 HOXA11P31270 313 aaPredicted RBP28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 PASD1Q8IV76 773 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 KLHL7Q8IXQ5 586 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 REM2Q8IYK8 340 aaPredicted RBP28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 AENQ8WTP8 325 aaKnown RBP28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 BTBD6Q96KE9 485 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 AP1M1Q9BXS5 423 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 SLITRK6Q9H5Y7 841 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 CYP3A43Q9HB55 503 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 MRPL47Q9HD33 250 aaKnown RBP28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 NXF1Q9UBU9 619 aaKnown RBP28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 ANAPC7Q9UJX3 599 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 POLIQ9UNA4 740 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 DERAQ9Y315 318 aa28.05■■■□□ 2.08
CCDC88C-205ENST00000553403 KPNA6O60684 536 aa28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 CAPN15O75808 1086 aa28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 HEXIM1O94992 359 aaKnown RBP28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 MYBL2P10244 700 aa28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 FGFR4P22455 802 aa28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 SLC1A1P43005 524 aa28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 IRX5P78411 483 aaPredicted RBP28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 MRPS25P82663 173 aaKnown RBP28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 PTP4A2Q12974 167 aa28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 FSCN1Q16658 493 aaKnown RBP28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 SLC27A1Q6PCB7 646 aa28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 SCARA5Q6ZMJ2 495 aa28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms