RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CYP1A1P04798 512 aaPredicted RBP18.58■□□□□ 0.56
SYNE3-202ENST00000553340 CD58P19256 250 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 CA4P22748 312 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 GJC1P36383 396 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 NPTX2P47972 431 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 HSD17B4P51659 736 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 DMP1Q13316 513 aaPredicted RBP18.58■□□□□ 0.56
SYNE3-202ENST00000553340 XKR9Q5GH70 373 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 EP400NLQ6ZTU2 488 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 MON1BQ7L1V2 547 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 C4orf19Q8IY42 314 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 ARMC2Q8NEN0 867 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 KIFC3Q9BVG8 833 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 TBC1D10AQ9BXI6 508 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 DEFB129Q9H1M3 183 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 KIF9Q9HAQ2 790 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 ASTN2O75129 1339 aaPredicted RBP18.57■□□□□ 0.56
SYNE3-202ENST00000553340 RPA3P35244 121 aaPredicted RBP18.57■□□□□ 0.56
SYNE3-202ENST00000553340 RAD23BP54727 409 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 GRIK3Q13003 919 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 SPP2Q13103 211 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 TKFCQ3LXA3 575 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 ZNF449Q6P9G9 518 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 LONP2Q86WA8 852 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 C4orf33Q8N1A6 199 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 SLC7A6OSQ96CW6 309 aaPredicted RBP18.57■□□□□ 0.56
SYNE3-202ENST00000553340 NUDCD1Q96RS6 583 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 FAM167BQ9BTA0 163 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 USTQ9Y2C2 406 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 ABL2P42684 1182 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 CCNHP51946 323 aaPredicted RBP18.57■□□□□ 0.56
SYNE3-202ENST00000553340 UGCGQ16739 394 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 SPDYAQ5MJ70 313 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 HHATQ5VTY9 493 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 CDCA2Q69YH5 1023 aaPredicted RBP18.57■□□□□ 0.56
SYNE3-202ENST00000553340 CC2D2BQ6DHV5 1058 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 IL31RAQ8NI17 732 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 C10orf82Q8WW14 230 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 GRID1Q9ULK0 1009 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 ANKRD31Q8N7Z5 1873 aa18.57■□□□□ 0.56
SYNE3-202ENST00000553340 PLA2G6O60733 806 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 TPBGLP0DKB5 382 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 T-ENOLP0DO92 83 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 MTMR1Q13613 665 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 ZYXQ15942 572 aaKnown RBP18.56■□□□□ 0.56
SYNE3-202ENST00000553340 C11orf70Q9BRQ4 267 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 VPS37BQ9H9H4 285 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 PPCSQ9HAB8 311 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 KMT5AQ9NQR1 393 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 TBC1D22BQ9NU19 505 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 ZNF148Q9UQR1 794 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 THSD7AQ9UPZ6 1657 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 LIASO43766 372 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 ECE2O60344 883 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 PECAM1P16284 738 aaPredicted RBP18.56■□□□□ 0.56
SYNE3-202ENST00000553340 PSMC5P62195 406 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 MAMLD1Q13495 774 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 WASHC2DQ5SRD0 308 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 PLA2G4FQ68DD2 849 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 NAIF1Q69YI7 327 aaPredicted RBP18.56■□□□□ 0.56
SYNE3-202ENST00000553340 TRIM68Q6AZZ1 485 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 GPD1LQ8N335 351 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 FBXO28Q9NVF7 368 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 COL20A1Q9P218 1284 aa18.56■□□□□ 0.56
SYNE3-202ENST00000553340 TRAFD1O14545 582 aaPredicted RBP18.55■□□□□ 0.56
SYNE3-202ENST00000553340 NFX1Q12986 1120 aaKnown RBP18.55■□□□□ 0.56
SYNE3-202ENST00000553340 WDR44Q5JSH3 913 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 SLC39A4Q6P5W5 647 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 ENDOVQ8N8Q3 282 aaKnown RBP18.55■□□□□ 0.56
SYNE3-202ENST00000553340 OSBPL1AQ9BXW6 950 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 FHDC1Q9C0D6 1143 aaPredicted RBP18.55■□□□□ 0.56
SYNE3-202ENST00000553340 ZFATQ9P243 1243 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 FEM1BQ9UK73 627 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 CCPG1Q9ULG6 757 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 RPL26L1Q9UNX3 145 aaKnown RBP18.55■□□□□ 0.56
SYNE3-202ENST00000553340 UBIAD1Q9Y5Z9 338 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 A6NHS1 94 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 EPHB2P29323 1055 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 ARSEP51690 589 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 RNASELQ05823 741 aaKnown RBP18.55■□□□□ 0.56
SYNE3-202ENST00000553340 SLC1A5Q15758 541 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 SLC45A4Q5BKX6 768 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 HP1BP3Q5SSJ5 553 aaPredicted RBP18.55■□□□□ 0.56
SYNE3-202ENST00000553340 TRIM72Q6ZMU5 477 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 GLIS1Q8NBF1 620 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 VCPIP1Q96JH7 1222 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 PRMT6Q96LA8 375 aaPredicted RBP18.55■□□□□ 0.56
SYNE3-202ENST00000553340 ANKEF1Q9NU02 776 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 TCEAL9Q9UHQ7 104 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 SLC24A2Q9UI40 661 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 DNPEPQ9ULA0 475 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 ZMYND8Q9ULU4 1186 aaPredicted RBP18.55■□□□□ 0.56
SYNE3-202ENST00000553340 SCINQ9Y6U3 715 aa18.55■□□□□ 0.56
SYNE3-202ENST00000553340 COL2A1P02458 1487 aaPredicted RBP18.55■□□□□ 0.56
SYNE3-202ENST00000553340 ATP2A1O14983 1001 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 TLR3O15455 904 aaKnown RBP18.54■□□□□ 0.56
SYNE3-202ENST00000553340 CBX6O95503 412 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 GM2AP17900 193 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 SATB1Q01826 763 aa18.54■□□□□ 0.56
SYNE3-202ENST00000553340 ENPEPQ07075 957 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms