RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 PWWP2AQ96N64 755 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 SMYD3Q9H7B4 428 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 CHST7Q9NS84 486 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 ANKRD65E5RJM6 399 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 ACKR2O00590 384 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 HBP1O60381 514 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 ITGB3P05106 788 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 MCL1Q07820 350 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 ADCY2Q08462 1091 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 MAMLD1Q13495 774 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 JADE1Q6IE81 842 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 CCDC26Q8TAB7 109 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 FBXO25Q8TCJ0 367 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 TCP11Q8WWU5 503 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 HAUS1Q96CS2 278 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 TWNKQ96RR1 684 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 CDHR5Q9HBB8 845 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 DAAM1Q9Y4D1 1078 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 GOLGA6L10A0A0M3HER8 536 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 ASB14A6NK59 587 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 H3BRB1 525 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 CCDC188H7C350 402 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 STAG3L1P0CL83 205 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 ARF4P18085 180 aaPredicted RBP11.81□□□□□ -0.52
CUX1-212ENST00000547394 HNRNPH2P55795 449 aaKnown RBP11.81□□□□□ -0.52
CUX1-212ENST00000547394 GRM1Q13255 1194 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 NNTQ13423 1086 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 GLRA4Q5JXX5 417 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 CCDC25Q86WR0 208 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 SLC13A5Q86YT5 568 aaPredicted RBP11.81□□□□□ -0.52
CUX1-212ENST00000547394 IQCKQ8N0W5 287 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 MCEEQ96PE7 176 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 C16orf70Q9BSU1 422 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 SDCBP2Q9H190 292 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 FZD8Q9H461 694 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 TUT1Q9H6E5 874 aaKnown RBP11.81□□□□□ -0.52
CUX1-212ENST00000547394 SIX4Q9UIU6 781 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 DCDC2CA8MYV0 355 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 F8VP50 259 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 TLR3O15455 904 aaKnown RBP11.8□□□□□ -0.52
CUX1-212ENST00000547394 DYNC1LI2O43237 492 aaPredicted RBP11.8□□□□□ -0.52
CUX1-212ENST00000547394 ZC3H11AO75152 810 aaKnown RBP eCLIP11.8□□□□□ -0.523e-6■■■■□ 25.7
CUX1-212ENST00000547394 CYP1A1P04798 512 aaPredicted RBP11.8□□□□□ -0.52
CUX1-212ENST00000547394 KRT10P13645 584 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 IBSPP21815 317 aaPredicted RBP11.8□□□□□ -0.52
CUX1-212ENST00000547394 CTNNA1P35221 906 aaKnown RBP11.8□□□□□ -0.52
CUX1-212ENST00000547394 RPL21P46778 160 aaKnown RBP11.8□□□□□ -0.52
CUX1-212ENST00000547394 RWDD2BP57060 319 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 CENPCQ03188 943 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 ENOSF1Q7L5Y1 443 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 WDR49Q8IV35 697 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 C1orf127Q8N9H9 656 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 EXOC4Q96A65 974 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 VTI1AQ96AJ9 217 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 APOL6Q9BWW8 343 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 XYLT2Q9H1B5 865 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 PTPRHQ9HD43 1115 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 PNMA3Q9UL41 463 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 PCDHA3Q9Y5H8 950 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 LRRC37A2A6NM11 1700 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 GH1P01241 217 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 CETPP11597 493 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 TNFRSF8P28908 595 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 ASPAP45381 313 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 ZNF200P98182 395 aaPredicted RBP11.8□□□□□ -0.52
CUX1-212ENST00000547394 OGDHQ02218 1023 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 CCL14Q16627 93 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 DENND1BQ6P3S1 775 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 TSHZ1Q6ZSZ6 1077 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 FAM76AQ8TAV0 307 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 LPIN3Q9BQK8 851 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 NIF3L1Q9GZT8 377 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 WNT8AQ9H1J5 351 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 SLITRK6Q9H5Y7 841 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 RPF1Q9H9Y2 349 aaKnown RBP11.8□□□□□ -0.52
CUX1-212ENST00000547394 GBA2Q9HCG7 927 aaPredicted RBP11.8□□□□□ -0.52
CUX1-212ENST00000547394 UVRAGQ9P2Y5 699 aa11.8□□□□□ -0.52
CUX1-212ENST00000547394 MIF4GDA9UHW6 222 aaKnown RBP11.79□□□□□ -0.52
CUX1-212ENST00000547394 RALAP11233 206 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 HADHBP55084 474 aaKnown RBP11.79□□□□□ -0.52
CUX1-212ENST00000547394 MCCD1P59942 119 aaPredicted RBP11.79□□□□□ -0.52
CUX1-212ENST00000547394 CCNA1P78396 465 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 PPFIA1Q13136 1202 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 PDCLQ13371 301 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 SIX1Q15475 284 aaPredicted RBP11.79□□□□□ -0.52
CUX1-212ENST00000547394 KCNV1Q6PIU1 500 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 TAB3Q8N5C8 712 aaPredicted RBP11.79□□□□□ -0.52
CUX1-212ENST00000547394 WDTC1Q8N5D0 677 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 EMC1Q8N766 993 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 RPS6KC1Q96S38 1066 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 ERP44Q9BS26 406 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 CYTH4Q9UIA0 394 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 DIS3Q9Y2L1 958 aaKnown RBP11.79□□□□□ -0.52
CUX1-212ENST00000547394 MGAMO43451 1857 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 IQCA1LA6NCM1 817 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 HCRTO43612 131 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 PHF2O75151 1096 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 SHBGP04278 402 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 PTGIRP43119 386 aa11.79□□□□□ -0.52
CUX1-212ENST00000547394 TFDP1Q14186 410 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms