RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 ODC1P11926 461 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 FGFR3P22607 806 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 MTIF2P46199 727 aaKnown RBP14.82□□□□□ -0.04
PTCH1-213ENST00000546820 GCLMP48507 274 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 DSG1Q02413 1049 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 NCOA4Q13772 614 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 ADGRE1Q14246 886 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 SGSM1Q2NKQ1 1148 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 ZACNQ401N2 412 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 KIAA0319Q5VV43 1072 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 TDRD10Q5VZ19 366 aaKnown RBP14.82□□□□□ -0.04
PTCH1-213ENST00000546820 PLPP4Q5VZY2 271 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 C11orf57Q6ZUT1 292 aaPredicted RBP14.82□□□□□ -0.04
PTCH1-213ENST00000546820 ANKS3Q6ZW76 656 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 METTL23Q86XA0 190 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 RNF168Q8IYW5 571 aaPredicted RBP14.82□□□□□ -0.04
PTCH1-213ENST00000546820 RIN2Q8WYP3 895 aaPredicted RBP14.82□□□□□ -0.04
PTCH1-213ENST00000546820 TAF4BQ92750 862 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 SENP8Q96LD8 212 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 VN1R3Q9BXE9 311 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 OXCT2Q9BYC2 517 aaPredicted RBP14.82□□□□□ -0.04
PTCH1-213ENST00000546820 IMPG2Q9BZV3 1241 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 NSUN3Q9H649 340 aaKnown RBP14.82□□□□□ -0.04
PTCH1-213ENST00000546820 MMRN2Q9H8L6 949 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 SIX4Q9UIU6 781 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 PCDHB8Q9UN66 801 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 NFE2L3Q9Y4A8 694 aa14.82□□□□□ -0.04
PTCH1-213ENST00000546820 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.82□□□□□ -0.04
PTCH1-213ENST00000546820 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.81□□□□□ -0.04
PTCH1-213ENST00000546820 M0QZQ0 153 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 C2CD2LO14523 706 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 PPEF2O14830 753 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 NCK2O43639 380 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 HUS1O60921 280 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 N4BP1O75113 896 aaKnown RBP14.81□□□□□ -0.04
PTCH1-213ENST00000546820 CLSTN1O94985 981 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 CSPG5O95196 566 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 P4HA1P13674 534 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 PRKCSHP14314 528 aaPredicted RBP14.81□□□□□ -0.04
PTCH1-213ENST00000546820 IRS1P35568 1242 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 AARSP49588 968 aaKnown RBP eCLIP14.81□□□□□ -0.04
PTCH1-213ENST00000546820 MYL5Q02045 173 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 PPP3CAQ08209 521 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 C1orf220Q5T0J3 134 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 DPH6Q7L8W6 267 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 TRIM59Q8IWR1 403 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 ANKRD20A12PQ8NF67 263 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 CXorf38Q8TB03 319 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 PIK3R5Q8WYR1 880 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 CNOT6LQ96LI5 555 aaKnown RBP14.81□□□□□ -0.04
PTCH1-213ENST00000546820 CDCA3Q99618 268 aaPredicted RBP14.81□□□□□ -0.04
PTCH1-213ENST00000546820 BPIFA3Q9BQP9 254 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 TLE6Q9H808 572 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 GDAP2Q9NXN4 497 aa14.81□□□□□ -0.04
PTCH1-213ENST00000546820 PLXNA4Q9HCM2 1894 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 C2orf71A6NGG8 1288 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 BECN2A8MW95 431 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 I3L4J1 428 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 LILRB3O75022 631 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 STAU1O95793 577 aaKnown RBP14.8□□□□□ -0.04
PTCH1-213ENST00000546820 TPM2P07951 284 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 TYMPP19971 482 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 IGFBP6P24592 240 aaPredicted RBP14.8□□□□□ -0.04
PTCH1-213ENST00000546820 TKTP29401 623 aaKnown RBP14.8□□□□□ -0.04
PTCH1-213ENST00000546820 PIK3CAP42336 1068 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 ZNF165P49910 485 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 MXI1P50539 228 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 MYL6P60660 151 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 TNNC1P63316 161 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 KCNH2Q12809 1159 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 WDR44Q5JSH3 913 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 C15orf39Q6ZRI6 1047 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 PPFIBP1Q86W92 1011 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 THEM5Q8N1Q8 247 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 TMEM130Q8N3G9 435 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 FBXL13Q8NEE6 735 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 SLC35C1Q96A29 364 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 MMS19Q96T76 1030 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 FUCA2Q9BTY2 467 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 FNIP2Q9P278 1114 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 SNX9Q9Y5X1 595 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 CHD9Q3L8U1 2897 aa14.8□□□□□ -0.04
PTCH1-213ENST00000546820 LAMA3Q16787 3333 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 HIDE1A8MVS5 230 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 SPTLC1O15269 473 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 PMM2O15305 246 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 P4HA2O15460 535 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 HLA-DRAP01903 254 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 AFPP02771 609 aaKnown RBP14.79□□□□□ -0.04
PTCH1-213ENST00000546820 CYP11A1P05108 521 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 ADH1AP07327 375 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 FAM163BP0C2L3 166 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 CDK11BP21127 795 aaKnown RBP14.79□□□□□ -0.04
PTCH1-213ENST00000546820 EEF1GP26641 437 aaKnown RBP14.79□□□□□ -0.04
PTCH1-213ENST00000546820 KLRC2P26717 231 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 FMO5P49326 533 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 TPM4P67936 248 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 YWHAHQ04917 246 aaPredicted RBP14.79□□□□□ -0.04
PTCH1-213ENST00000546820 PTPN14Q15678 1187 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 PSMD5Q16401 504 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms