RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 R4GN57 208 aa9.24□□□□□ -0.93
USP28-215ENST00000545608 KANSL1LA0AUZ9 987 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 H3BQV1 296 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 H7C4K7 107 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 NRG2O14511 850 aaPredicted RBP9.23□□□□□ -0.93
USP28-215ENST00000545608 PRRG1O14668 218 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 CLDN3O15551 220 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 SP9P0CG40 484 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 CXCL8P10145 99 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 CEBPBP17676 345 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 CD72P21854 359 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 MCM4P33991 863 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 TNFSF9P41273 254 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 CCR2P41597 374 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 NOLC1Q14978 699 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP28-215ENST00000545608 MLF2Q15773 248 aaPredicted RBP9.23□□□□□ -0.93
USP28-215ENST00000545608 ZBTB6Q15916 424 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 PRSS36Q5K4E3 855 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 ARL6IP4Q66PJ3 421 aaKnown RBP9.23□□□□□ -0.93
USP28-215ENST00000545608 TANGO2Q6ICL3 276 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 C1orf210Q8IVY1 113 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 MAML2Q8IZL2 1156 aaPredicted RBP9.23□□□□□ -0.93
USP28-215ENST00000545608 KCTD17Q8N5Z5 321 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 CDK5RAP3Q96JB5 506 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 TBC1D32Q96NH3 1257 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 CORO1BQ9BR76 489 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 DDX23Q9BUQ8 820 aaKnown RBP9.23□□□□□ -0.93
USP28-215ENST00000545608 KCNG1Q9UIX4 513 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 FAM186AA6NE01 2351 aa9.23□□□□□ -0.93
USP28-215ENST00000545608 NOTCH4Q99466 2003 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 TTC26A0AVF1 554 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 FAM170BA6NMN3 283 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 LACTBL1A8MY62 500 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 ARHGAP33O14559 1287 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 MOSPD3O75425 235 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 ECI2O75521 394 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 CLTAP09496 248 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 MARCKSP29966 332 aaPredicted RBP9.22□□□□□ -0.93
USP28-215ENST00000545608 LRPAP1P30533 357 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 MATR3P43243 847 aaKnown RBP eCLIP9.22□□□□□ -0.93
USP28-215ENST00000545608 GUCY2FP51841 1108 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 NCKAP1LP55160 1127 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 PFKPQ01813 784 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 PRKCQQ04759 706 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 GRIN1Q05586 938 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 ADCY1Q08828 1119 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 DHX8Q14562 1220 aaKnown RBP9.22□□□□□ -0.93
USP28-215ENST00000545608 UBXN2BQ14CS0 331 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 ZBTB41Q5SVQ8 909 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 SWT1Q5T5J6 900 aaKnown RBP9.22□□□□□ -0.93
USP28-215ENST00000545608 TPGS2Q68CL5 300 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 ZNF280DQ6N043 979 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 RNF19BQ6ZMZ0 732 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 HAUS6Q7Z4H7 955 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 APPL2Q8NEU8 664 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 KCNG4Q8TDN1 519 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 KCNN1Q92952 543 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 ZSWIM3Q96MP5 696 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 REEP2Q9BRK0 252 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 PLEKHA5Q9HAU0 1116 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 GDPD2Q9HCC8 539 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 LTB4R2Q9NPC1 389 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 BLOC1S4Q9NUP1 217 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 GDE1Q9NZC3 331 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 KCND2Q9NZV8 630 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 CEP72Q9P209 647 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 LARSQ9P2J5 1176 aaKnown RBP9.22□□□□□ -0.93
USP28-215ENST00000545608 AFF4Q9UHB7 1163 aaKnown RBP9.22□□□□□ -0.93
USP28-215ENST00000545608 TIMM13Q9Y5L4 95 aaPredicted RBP9.22□□□□□ -0.93
USP28-215ENST00000545608 INSL5Q9Y5Q6 135 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 COL4A3Q01955 1670 aa9.22□□□□□ -0.93
USP28-215ENST00000545608 TRIP11Q15643 1979 aa9.21□□□□□ -0.93
USP28-215ENST00000545608 SHISA7A6NL88 538 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 M0QZQ0 153 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 ZNF197O14709 1029 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 PPEF2O14830 753 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 FAM189A1O60320 539 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 VNN2O95498 520 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 LMNAP02545 664 aaKnown RBP9.21□□□□□ -0.94
USP28-215ENST00000545608 OR4Q2P0C623 313 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 GJA1P17302 382 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 FCARP24071 287 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 TARSP26639 723 aaKnown RBP9.21□□□□□ -0.94
USP28-215ENST00000545608 UBA7P41226 1012 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 AARSP49588 968 aaKnown RBP eCLIP9.21□□□□□ -0.94
USP28-215ENST00000545608 TWF1Q12792 350 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 GRM2Q14416 872 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 ENOX2Q16206 610 aaKnown RBP9.21□□□□□ -0.94
USP28-215ENST00000545608 FAM78AQ5JUQ0 283 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 LARP1BQ659C4 914 aaKnown RBP9.21□□□□□ -0.94
USP28-215ENST00000545608 TPRG1Q6ZUI0 275 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 PDZD4Q76G19 769 aaPredicted RBP9.21□□□□□ -0.94
USP28-215ENST00000545608 GPBP1Q86WP2 473 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 MYCT1Q8N699 235 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 ELSPBP1Q96BH3 223 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 BICD1Q96G01 975 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 AK8Q96MA6 479 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 ZNF512Q96ME7 567 aaPredicted RBP9.21□□□□□ -0.94
USP28-215ENST00000545608 SLC4A5Q9BY07 1137 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 BCO2Q9BYV7 579 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms