RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 PTK6Q13882 451 aa19.16■□□□□ 0.66
VIM-209ENST00000544301 HSDL1Q3SXM5 330 aa19.16■□□□□ 0.66
VIM-209ENST00000544301 TRIM50Q86XT4 487 aa19.16■□□□□ 0.66
VIM-209ENST00000544301 TCP11Q8WWU5 503 aa19.16■□□□□ 0.66
VIM-209ENST00000544301 FGD4Q96M96 766 aa19.16■□□□□ 0.66
VIM-209ENST00000544301 HEMGNQ9BXL5 484 aa19.16■□□□□ 0.66
VIM-209ENST00000544301 MTMR12Q9C0I1 747 aa19.16■□□□□ 0.66
VIM-209ENST00000544301 CNOT10Q9H9A5 744 aaKnown RBP19.16■□□□□ 0.66
VIM-209ENST00000544301 ELP3Q9H9T3 547 aa19.16■□□□□ 0.66
VIM-209ENST00000544301 ASIC3Q9UHC3 531 aa19.16■□□□□ 0.66
VIM-209ENST00000544301 TLDC2A0PJX2 215 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 ABLIM1O14639 778 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 OGTO15294 1046 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 TLR3O15455 904 aaKnown RBP19.15■□□□□ 0.66
VIM-209ENST00000544301 LGR5O75473 907 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 GJB6O95452 261 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 PGK2P07205 417 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 ITIH2P19823 946 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 MYL6P60660 151 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 MCL1Q07820 350 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 MXD4Q14582 209 aaPredicted RBP19.15■□□□□ 0.66
VIM-209ENST00000544301 CCDC25Q86WR0 208 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 SPATS2Q86XZ4 545 aaKnown RBP19.15■□□□□ 0.66
VIM-209ENST00000544301 CCDC50Q8IVM0 306 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 KATNAL2Q8IYT4 538 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 LRRC71Q8N4P6 559 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 RNF149Q8NC42 400 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 UHMK1Q8TAS1 419 aaKnown RBP19.15■□□□□ 0.66
VIM-209ENST00000544301 FEZF2Q8TBJ5 459 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 OTUD5Q96G74 571 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 PARVAQ9NVD7 372 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 DICER1Q9UPY3 1922 aaKnown RBP19.15■□□□□ 0.66
VIM-209ENST00000544301 IGKV6-21A0A0C4DH24 114 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 GAS2O43903 313 aaKnown RBP19.15■□□□□ 0.66
VIM-209ENST00000544301 MMP8P22894 467 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 IVDP26440 423 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 ADCY2Q08462 1091 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 ZNF568Q3ZCX4 644 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 CELF3Q5SZQ8 465 aaKnown RBP19.15■□□□□ 0.66
VIM-209ENST00000544301 C6orf118Q5T5N4 469 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 RHBDF2Q6PJF5 856 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 ZBTB8OSQ8IWT0 167 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 GRK7Q8WTQ7 553 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 RAPGEF5Q92565 580 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 FAM212AQ96EL1 285 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 AAASQ9NRG9 546 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 CPSF3Q9UKF6 684 aaKnown RBP19.15■□□□□ 0.66
VIM-209ENST00000544301 USTQ9Y2C2 406 aa19.15■□□□□ 0.66
VIM-209ENST00000544301 SMIM23A6NLE4 172 aa19.14■□□□□ 0.65
VIM-209ENST00000544301 RGS16O15492 202 aaPredicted RBP19.14■□□□□ 0.65
VIM-209ENST00000544301 DDNO94850 711 aaPredicted RBP19.14■□□□□ 0.65
VIM-209ENST00000544301 MAPK6Q16659 721 aa19.14■□□□□ 0.65
VIM-209ENST00000544301 DUOXA2Q1HG44 320 aa19.14■□□□□ 0.65
VIM-209ENST00000544301 TRMT10CQ7L0Y3 403 aaKnown RBP19.14■□□□□ 0.65
VIM-209ENST00000544301 CROCCP2Q86T23 111 aa19.14■□□□□ 0.65
VIM-209ENST00000544301 ATL2Q8NHH9 583 aa19.14■□□□□ 0.65
VIM-209ENST00000544301 DCPSQ96C86 337 aaKnown RBP19.14■□□□□ 0.65
VIM-209ENST00000544301 SNF8Q96H20 258 aa19.14■□□□□ 0.65
VIM-209ENST00000544301 ATXN2Q99700 1313 aaKnown RBP19.14■□□□□ 0.65
VIM-209ENST00000544301 A0A087WUV0 522 aaPredicted RBP19.13■□□□□ 0.65
VIM-209ENST00000544301 NOP56O00567 594 aaKnown RBP19.13■□□□□ 0.65
VIM-209ENST00000544301 SLC25A27O95847 323 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 GAS8O95995 478 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 CD58P19256 250 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 PLCB4Q15147 1175 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 KCNV1Q6PIU1 500 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 PLPPR4Q7Z2D5 763 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 CCDC125Q86Z20 511 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 SULF1Q8IWU6 871 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 EXD1Q8NHP7 514 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 MDM1Q8TC05 714 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 EPS8L3Q8TE67 593 aaKnown RBP19.13■□□□□ 0.65
VIM-209ENST00000544301 CLMNQ96JQ2 1002 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 OSBPL8Q9BZF1 889 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 NIF3L1Q9GZT8 377 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 ADARB2Q9NS39 739 aaKnown RBP19.13■□□□□ 0.65
VIM-209ENST00000544301 HOMER3Q9NSC5 361 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 NF2P35240 595 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 SSR1P43307 286 aaKnown RBP19.13■□□□□ 0.65
VIM-209ENST00000544301 IREB2P48200 963 aaKnown RBP19.13■□□□□ 0.65
VIM-209ENST00000544301 RPL7AP62424 266 aaKnown RBP19.13■□□□□ 0.65
VIM-209ENST00000544301 IFI35P80217 286 aaPredicted RBP19.13■□□□□ 0.65
VIM-209ENST00000544301 TRIP13Q15645 432 aaPredicted RBP19.13■□□□□ 0.65
VIM-209ENST00000544301 CCNG2Q16589 344 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 SGSM1Q2NKQ1 1148 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 ANKS1BQ7Z6G8 1248 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 EXOC8Q8IYI6 725 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 C3orf20Q8ND61 904 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 CCDC114Q96M63 670 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 MPHOSPH6Q99547 160 aaKnown RBP19.13■□□□□ 0.65
VIM-209ENST00000544301 C2orf40Q9H1Z8 148 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 TXNRD2Q9NNW7 524 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 CISHQ9NSE2 258 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 IP6K2Q9UHH9 426 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 NEU2Q9Y3R4 380 aa19.13■□□□□ 0.65
VIM-209ENST00000544301 TMEM191CA6NGB0 347 aa19.12■□□□□ 0.65
VIM-209ENST00000544301 AGTP01019 485 aa19.12■□□□□ 0.65
VIM-209ENST00000544301 TMEM191BP0C7N4 346 aa19.12■□□□□ 0.65
VIM-209ENST00000544301 BRD2P25440 801 aaKnown RBP19.12■□□□□ 0.65
VIM-209ENST00000544301 CHKAP35790 457 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms