RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 NCDNQ9UBB6 729 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 PCDHB8Q9UN66 801 aa16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 KIF26AQ9ULI4 1882 aaPredicted RBP16.88■□□□□ 0.29
CLSTN3-213ENST00000541953 TTC26A0AVF1 554 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 H7C4K7 107 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 FAM189A1O60320 539 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 SOAT2O75908 522 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 PLS3P13797 630 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 MAGEA9P43362 315 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 SOX9P48436 509 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 SLC12A3P55017 1021 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 MCL1Q07820 350 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 DMWDQ09019 674 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 ARSHQ5FYA8 562 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 HYIQ5T013 277 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 ZSCAN18Q8TBC5 510 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 SPIRE2Q8WWL2 714 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 ATRIPQ8WXE1 791 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 LRRC3BQ96PB8 259 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 NTPCRQ9BSD7 190 aaKnown RBP16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 MKNK1Q9BUB5 465 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 PPP4R2Q9NY27 417 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 RBM19Q9Y4C8 960 aaKnown RBP16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 PIAS3Q9Y6X2 628 aa16.87■□□□□ 0.29
CLSTN3-213ENST00000541953 M0QZQ0 153 aa16.86■□□□□ 0.29
CLSTN3-213ENST00000541953 MICAL2O94851 1124 aa16.86■□□□□ 0.29
CLSTN3-213ENST00000541953 PSMC3P17980 439 aa16.86■□□□□ 0.29
CLSTN3-213ENST00000541953 PRPHP41219 470 aa16.86■□□□□ 0.29
CLSTN3-213ENST00000541953 AARSP49588 968 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLSTN3-213ENST00000541953 SATB1Q01826 763 aa16.86■□□□□ 0.29
CLSTN3-213ENST00000541953 ZBTB6Q15916 424 aa16.86■□□□□ 0.29
CLSTN3-213ENST00000541953 RBM12Q9NTZ6 932 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-213ENST00000541953 NUP210Q8TEM1 1887 aaPredicted RBP16.86■□□□□ 0.29
CLSTN3-213ENST00000541953 EPG5Q9HCE0 2579 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 A0A1W2PRU2 124 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 HEPACAM2A8MVW5 462 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 ZNF197O14709 1029 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 LRPAP1P30533 357 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 ATP2C1P98194 919 aaPredicted RBP16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 DUSP4Q13115 394 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 ENOX2Q16206 610 aaKnown RBP16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 TMEM119Q4V9L6 283 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 CYP4A22Q5TCH4 519 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 SLC39A4Q6P5W5 647 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 TXNDC11Q6PKC3 985 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 DTHD1Q6ZMT9 781 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 SYT2Q8N9I0 419 aaPredicted RBP16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 FAM3CQ92520 227 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 KIF12Q96FN5 646 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 ZNF512Q96ME7 567 aaPredicted RBP16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 NELL2Q99435 816 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 C17orf75Q9HAS0 396 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 LMAN1LQ9HAT1 526 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 ASAH2Q9NR71 780 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 SLC27A5Q9Y2P5 690 aa16.85■□□□□ 0.29
CLSTN3-213ENST00000541953 KMT2BQ9UMN6 2715 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 SCN1AP35498 2009 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 LAMA1P25391 3075 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 LACTBL1A8MY62 500 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 OAZ2O95190 189 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 NEFLP07196 543 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 PLA2G4BP0C869 781 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 CHRNB1P11230 501 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 CCNE1P24864 410 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 ATXN1P54253 815 aaKnown RBP16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 NCKAP1LP55160 1127 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 YWHAHQ04917 246 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 STRN3Q13033 797 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 SRSF5Q13243 272 aaKnown RBP16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 IQCEQ6IPM2 695 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 ZPBP2Q6X784 338 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 Q6ZS52 159 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 ATAD1Q8NBU5 361 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 APPL2Q8NEU8 664 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 TTC8Q8TAM2 541 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 IRF7Q92985 503 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 ZFYVE19Q96K21 471 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 ZSCAN31Q96LW9 406 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 RAB34Q9BZG1 259 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 TRPV4Q9HBA0 871 aa16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 SH2B1Q9NRF2 756 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-213ENST00000541953 MTMR11A4FU01 709 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 VWA3AA6NCI4 1184 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 SLC38A8A6NNN8 435 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 TISP43B9A030 160 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 LAD1O00515 517 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 NCAM2O15394 837 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 CLDN3O15551 220 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 CD2BP2O95400 341 aaKnown RBP16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 GAREM2Q75VX8 874 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 MFSD6LQ8IWD5 586 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 ELMOD1Q8N336 334 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 OR10T2Q8NGX3 314 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 REEP2Q9BRK0 252 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 IKZF4Q9H2S9 585 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 SLITRK6Q9H5Y7 841 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 TRPV5Q9NQA5 729 aa16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 MRPS17Q9Y2R5 130 aaKnown RBP16.83■□□□□ 0.28
CLSTN3-213ENST00000541953 PRAMEF12O95522 483 aa16.82■□□□□ 0.28
CLSTN3-213ENST00000541953 NFICP08651 508 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms