RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 CBWD2Q8IUF1 395 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 GLYCTKQ8IVS8 523 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 NELFCDQ8IXH7 590 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 KREMEN2Q8NCW0 462 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 CXorf38Q8TB03 319 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 CCDC47Q96A33 483 aaKnown RBP14.18□□□□□ -0.14
LTBR-208ENST00000541005 TIGD1Q96MW7 591 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 OXCT2Q9BYC2 517 aaPredicted RBP14.18□□□□□ -0.14
LTBR-208ENST00000541005 KCTD10Q9H3F6 313 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 POMKQ9H5K3 350 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 CHMP5Q9NZZ3 219 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 CDH22Q9UJ99 828 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 CDY1Q9Y6F8 540 aa14.18□□□□□ -0.14
LTBR-208ENST00000541005 ARHGEF37A1IGU5 675 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 ZMYND10O75800 440 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 ABLIM3O94929 683 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 CYP11A1P05108 521 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 HNRNPA1P09651 372 aaKnown RBP eCLIP14.17□□□□□ -0.14
LTBR-208ENST00000541005 SSTR3P32745 418 aaPredicted RBP14.17□□□□□ -0.14
LTBR-208ENST00000541005 TAF6P49848 677 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 ROR1Q01973 937 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 SURF1Q15526 300 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 SNRNP35Q16560 246 aaKnown RBP14.17□□□□□ -0.14
LTBR-208ENST00000541005 TMC5Q6UXY8 1006 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 SLC9A9Q8IVB4 645 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 C1orf127Q8N9H9 656 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 XXYLT1Q8NBI6 393 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 ZNF461Q8TAF7 563 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 FEZF2Q8TBJ5 459 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 CACTINQ8WUQ7 758 aaKnown RBP14.17□□□□□ -0.14
LTBR-208ENST00000541005 ZNF707Q96C28 371 aaPredicted RBP14.17□□□□□ -0.14
LTBR-208ENST00000541005 ZNF560Q96MR9 790 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 PDE11AQ9HCR9 933 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 FBXL5Q9UKA1 691 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 ITGA11Q9UKX5 1188 aa14.17□□□□□ -0.14
LTBR-208ENST00000541005 CCDC195A0A1B0GUA6 201 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 SPDYE4A6NLX3 237 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 PDXKO00764 312 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 SPTLC1O15269 473 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 RFPL2O75678 378 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 WEE2P0C1S8 567 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 SPATA31D3P0C874 917 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 ODC1P11926 461 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 PNPLA4P41247 253 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 CYP2J2P51589 502 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 TFAMQ00059 246 aaKnown RBP14.16□□□□□ -0.14
LTBR-208ENST00000541005 YWHAHQ04917 246 aaPredicted RBP14.16□□□□□ -0.14
LTBR-208ENST00000541005 CYP24A1Q07973 514 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 MYBPC2Q14324 1141 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 PSMD6Q15008 389 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 UVSSAQ2YD98 709 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 CTXN3Q4LDR2 81 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 LIN9Q5TKA1 542 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 SPATA31D4Q6ZUB0 917 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 WDR49Q8IV35 697 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 ELOA2Q8IYF1 753 aaPredicted RBP14.16□□□□□ -0.14
LTBR-208ENST00000541005 LRRC52Q8N7C0 313 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 SPATA20Q8TB22 786 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 SENP8Q96LD8 212 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 PRKD2Q9BZL6 878 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 INTS13Q9NVM9 706 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 DMAC2Q9NW81 257 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 MAFFQ9ULX9 164 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 USTQ9Y2C2 406 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 NR2E1Q9Y466 385 aa14.16□□□□□ -0.14
LTBR-208ENST00000541005 PTPRJQ12913 1337 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 GREB1Q4ZG55 1949 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 OBSL1O75147 1896 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 WDR27A2RRH5 827 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 CLIC2O15247 247 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 KIF20AO95235 890 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 C8AP07357 584 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 POLR2BP30876 1174 aaKnown RBP14.15□□□□□ -0.14
LTBR-208ENST00000541005 NFIL3Q16649 462 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 SV2CQ496J9 727 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 TPGS2Q68CL5 300 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 DSTYKQ6XUX3 929 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 CCDC149Q6ZUS6 474 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 GUF1Q8N442 669 aaKnown RBP14.15□□□□□ -0.14
LTBR-208ENST00000541005 SMG7Q92540 1137 aaKnown RBP14.15□□□□□ -0.14
LTBR-208ENST00000541005 BORCS6Q96GS4 357 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 MFSD14AQ96MC6 490 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 MTMR12Q9C0I1 747 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 WDR6Q9NNW5 1121 aaKnown RBP14.15□□□□□ -0.14
LTBR-208ENST00000541005 SIX4Q9UIU6 781 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 DSEQ9UL01 958 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 TRAF3IP3Q9Y228 551 aa14.15□□□□□ -0.14
LTBR-208ENST00000541005 CLUHO75153 1309 aa14.15□□□□□ -0.15
LTBR-208ENST00000541005 OR6C75A6NL08 312 aa14.14□□□□□ -0.15
LTBR-208ENST00000541005 PI4K2BG5E9Z4 385 aa14.14□□□□□ -0.15
LTBR-208ENST00000541005 PRPF40AO75400 957 aaKnown RBP14.14□□□□□ -0.15
LTBR-208ENST00000541005 ITGB3P05106 788 aa14.14□□□□□ -0.15
LTBR-208ENST00000541005 TMEM191BP0C7N4 346 aa14.14□□□□□ -0.15
LTBR-208ENST00000541005 ATF2P15336 505 aa14.14□□□□□ -0.15
LTBR-208ENST00000541005 PNOCQ13519 176 aa14.14□□□□□ -0.15
LTBR-208ENST00000541005 DUOXA2Q1HG44 320 aa14.14□□□□□ -0.15
LTBR-208ENST00000541005 COBLL1Q53SF7 1204 aa14.14□□□□□ -0.15
LTBR-208ENST00000541005 PPM1LQ5SGD2 360 aa14.14□□□□□ -0.15
LTBR-208ENST00000541005 OVOS1Q6IE37 1185 aa14.14□□□□□ -0.15
LTBR-208ENST00000541005 USP37Q86T82 979 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms