RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 A8MXQ7 604 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 FOXO6A8MYZ6 492 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 H3BSA7 217 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 PGRMC1O00264 195 aaKnown RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 CES2O00748 559 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 GYG2O15488 501 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 TSPAN1O60635 241 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 ICMTO60725 284 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 ZBTB11O95625 1053 aaPredicted RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 BAG2O95816 211 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 CRYZL1O95825 349 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 CCDC159P0C7I6 412 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 KLRC3Q07444 240 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 PDAP1Q13442 181 aaKnown RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 ATP1A4Q13733 1029 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 GCKRQ14397 625 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 COL19A1Q14993 1142 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 CDONQ4KMG0 1287 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 ANKRD20A4Q4UJ75 823 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 TMEM63BQ5T3F8 832 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 FBXL19Q6PCT2 694 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 PIP4K2CQ8TBX8 421 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 ZFRQ96KR1 1074 aaKnown RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 ANKRD2Q9GZV1 360 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 BLZF1Q9H2G9 400 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 SLITRK6Q9H5Y7 841 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 C9orf78Q9NZ63 289 aaPredicted RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 CNOT7Q9UIV1 285 aaKnown RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 ZFP69BQ9UJL9 534 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 PPM1HQ9ULR3 514 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 EXOC7Q9UPT5 735 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 GPSM3Q9Y4H4 160 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 SRPRBQ9Y5M8 271 aaKnown RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 CEPT1Q9Y6K0 416 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 KRIT1O00522 736 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 FYNP06241 537 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 TGFB3P10600 412 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 KRT4P19013 534 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 ADSLP30566 484 aaPredicted RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 COPB2P35606 906 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 MTIF2P46199 727 aaKnown RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 PMS1P54277 932 aaKnown RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 AQP4P55087 323 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 POLR2FP61218 127 aaKnown RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 TRIM28Q13263 835 aaKnown RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 EFTUD2Q15029 972 aaKnown RBP eCLIP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 SLC15A2Q16348 729 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 LRRC36Q1X8D7 754 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 TIGD2Q4W5G0 525 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 LVRNQ6Q4G3 990 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 PAOXQ6QHF9 649 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 DTHD1Q6ZMT9 781 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 CLNKQ7Z7G1 428 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 CLVS1Q8IUQ0 354 aaPredicted RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 VPS52Q8N1B4 723 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 PDZD8Q8NEN9 1154 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 C10orf82Q8WW14 230 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 CEP63Q96MT8 703 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 UNKQ9C0B0 810 aaKnown RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 RNF41Q9H4P4 317 aaPredicted RBP9.98□□□□□ -0.81
CLIP1-214ENST00000540539 NCKIPSDQ9NZQ3 722 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 NDUFB9Q9Y6M9 179 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 PITPNM2Q9BZ72 1349 aa9.98□□□□□ -0.81
CLIP1-214ENST00000540539 XDHP47989 1333 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 CCDC188H7C350 402 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 GRM8O00222 908 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 EPHB6O15197 1021 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 TRPA1O75762 1119 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 KLRC1P26715 233 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 PON1P27169 355 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 RALGDSQ12967 914 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 IFIT5Q13325 482 aaKnown RBP9.97□□□□□ -0.81
CLIP1-214ENST00000540539 RASGRF1Q13972 1273 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 C15orf59Q2T9L4 293 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-214ENST00000540539 ASTE1Q2TB18 679 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-214ENST00000540539 MMEL1Q495T6 779 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 FIGNQ5HY92 759 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 ZNF34Q8IZ26 560 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 ELMOD1Q8N336 334 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 C12orf50Q8NA57 414 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-214ENST00000540539 VPS37AQ8NEZ2 397 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 CALML6Q8TD86 181 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 CHPT1Q8WUD6 406 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 TUBGCP2Q9BSJ2 902 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 PALMDQ9NP74 551 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 GDAQ9Y2T3 454 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 PCDHB6Q9Y5E3 794 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 TXNDC9O14530 226 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 MCF2LO15068 1137 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 MARCH6O60337 910 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 KRT75O95678 551 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 FGFR4P22455 802 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 SPCS2Q15005 226 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 RPS6KA1Q15418 735 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 NAB2Q15742 525 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 OGFOD2Q6N063 350 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 C4orf22Q6V702 233 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 NLRP10Q86W26 655 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 MMAAQ8IVH4 418 aaKnown RBP9.97□□□□□ -0.81
CLIP1-214ENST00000540539 PCYOX1LQ8NBM8 494 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms