RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 TCEAL8Q8IYN2 117 aa14.42□□□□□ -0.1
VPS28-211ENST00000530790 ELMOD1Q8N336 334 aa14.42□□□□□ -0.1
VPS28-211ENST00000530790 RSAD2Q8WXG1 361 aa14.42□□□□□ -0.1
VPS28-211ENST00000530790 FAM213AQ9BRX8 229 aa14.42□□□□□ -0.1
VPS28-211ENST00000530790 TRIM9Q9C026 710 aa14.42□□□□□ -0.1
VPS28-211ENST00000530790 TMEM206Q9H813 350 aa14.42□□□□□ -0.1
VPS28-211ENST00000530790 FAM13BQ9NYF5 915 aa14.42□□□□□ -0.1
VPS28-211ENST00000530790 DNMT3BQ9UBC3 853 aaKnown RBP14.42□□□□□ -0.1
VPS28-211ENST00000530790 AFF4Q9UHB7 1163 aaKnown RBP14.42□□□□□ -0.1
VPS28-211ENST00000530790 KCNH3Q9ULD8 1083 aa14.42□□□□□ -0.1
VPS28-211ENST00000530790 MAFFQ9ULX9 164 aa14.42□□□□□ -0.1
VPS28-211ENST00000530790 TIMM13Q9Y5L4 95 aaPredicted RBP14.42□□□□□ -0.1
VPS28-211ENST00000530790 KMT2EQ8IZD2 1858 aa14.42□□□□□ -0.1
VPS28-211ENST00000530790 ZNF318Q5VUA4 2279 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 MUC6Q6W4X9 2439 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 OR6C75A6NL08 312 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 TULP1O00294 542 aaPredicted RBP14.41□□□□□ -0.1
VPS28-211ENST00000530790 NARSO43776 548 aaKnown RBP14.41□□□□□ -0.1
VPS28-211ENST00000530790 OAZ2O95190 189 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 LDHAP00338 332 aaKnown RBP14.41□□□□□ -0.1
VPS28-211ENST00000530790 RHOP08100 348 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 SRFP11831 508 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 TYMPP19971 482 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 GARTP22102 1010 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 LILRA4P59901 499 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 DNM1Q05193 864 aaKnown RBP14.41□□□□□ -0.1
VPS28-211ENST00000530790 ADCY1Q08828 1119 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 OVOS1Q6IE37 1185 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 ARMCX5Q6P1M9 558 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 CRELD2Q6UXH1 353 aaPredicted RBP14.41□□□□□ -0.1
VPS28-211ENST00000530790 MTSS1LQ765P7 747 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 NT5DC4Q86YG4 428 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 BRSK2Q8IWQ3 736 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 ITFG1Q8TB96 612 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 NOC3LQ8WTT2 800 aaKnown RBP14.41□□□□□ -0.1
VPS28-211ENST00000530790 FGF13Q92913 245 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 SAAL1Q96ER3 474 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 DPP3Q9NY33 737 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 RBAKQ9NYW8 714 aaPredicted RBP14.41□□□□□ -0.1
VPS28-211ENST00000530790 MRPS23Q9Y3D9 190 aaKnown RBP14.41□□□□□ -0.1
VPS28-211ENST00000530790 NUMBLQ9Y6R0 609 aa14.41□□□□□ -0.1
VPS28-211ENST00000530790 ANO9A1A5B4 782 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 ANHXE9PGG2 379 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 PIRO00625 290 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 POLR2DO15514 142 aaKnown RBP14.4□□□□□ -0.1
VPS28-211ENST00000530790 PRPF6O94906 941 aaKnown RBP14.4□□□□□ -0.1
VPS28-211ENST00000530790 CFHP08603 1231 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 OR4Q2P0C623 313 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 AVPR2P30518 371 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 TAF6P49848 677 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 IER5LQ5T953 404 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 NPAS3Q8IXF0 933 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 EFCAB13Q8IY85 973 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 SIX5Q8N196 739 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 SLC44A3Q8N4M1 653 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 PRSS33Q8NF86 280 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 ING5Q8WYH8 240 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 SENP8Q96LD8 212 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 ZNF560Q96MR9 790 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 PYM1Q9BRP8 204 aaKnown RBP14.4□□□□□ -0.1
VPS28-211ENST00000530790 CBWD1Q9BRT8 395 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 PCDHA7Q9UN72 937 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 WDFY4Q6ZS81 3184 aa14.4□□□□□ -0.1
VPS28-211ENST00000530790 TSC2P49815 1807 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 KIAA0391O15091 583 aaKnown RBP14.39□□□□□ -0.11
VPS28-211ENST00000530790 SPTLC1O15269 473 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 EIF3DO15371 548 aaKnown RBP eCLIP14.39□□□□□ -0.11
VPS28-211ENST00000530790 EXTL3O43909 919 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 SEC24AO95486 1093 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 PTPN2P17706 415 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 PNPLA4P41247 253 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 PTPN5P54829 565 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 TFAMQ00059 246 aaKnown RBP14.39□□□□□ -0.11
VPS28-211ENST00000530790 NHLH1Q02575 133 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 TWF1Q12792 350 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 PLD1Q13393 1074 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 MYBPC2Q14324 1141 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 FAM26FQ5R3K3 315 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 RESP18Q5W5W9 173 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 ASTLQ6HA08 431 aaPredicted RBP14.39□□□□□ -0.11
VPS28-211ENST00000530790 IQCEQ6IPM2 695 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 CNNM4Q6P4Q7 775 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 RNF19BQ6ZMZ0 732 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 PDZD4Q76G19 769 aaPredicted RBP14.39□□□□□ -0.11
VPS28-211ENST00000530790 FLCNQ8NFG4 579 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 ST13P5Q8NFI4 369 aaPredicted RBP14.39□□□□□ -0.11
VPS28-211ENST00000530790 FGF14Q92915 247 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 HPS3Q969F9 1004 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 PGLYRP2Q96PD5 576 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 CORO1BQ9BR76 489 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 AVENQ9NQS1 362 aaPredicted RBP14.39□□□□□ -0.11
VPS28-211ENST00000530790 DSEQ9UL01 958 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 YIPF1Q9Y548 306 aa14.39□□□□□ -0.11
VPS28-211ENST00000530790 ANK1P16157 1881 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 GOLGA8IPA6NC78 632 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 GOLGA8JA6NMD2 632 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 ZNF197O14709 1029 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 CYP11A1P05108 521 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 CEBPBP17676 345 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 RFX1P22670 979 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms