RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 THRAP3Q9Y2W1 955 aaKnown RBP9.08□□□□□ -0.96
CSDE1-213ENST00000530784 REXO2Q9Y3B8 237 aaKnown RBP9.08□□□□□ -0.96
CSDE1-213ENST00000530784 SLIT3O75094 1523 aa9.08□□□□□ -0.96
CSDE1-213ENST00000530784 ATRNL1Q5VV63 1379 aa9.08□□□□□ -0.96
CSDE1-213ENST00000530784 LEFTY2O00292 366 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 RPS6KA4O75676 772 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 SCAF4O95104 1147 aaKnown RBP9.07□□□□□ -0.96
CSDE1-213ENST00000530784 PEX11BO96011 259 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 MYBL2P10244 700 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 APOBEC3AP31941 199 aaPredicted RBP9.07□□□□□ -0.96
CSDE1-213ENST00000530784 DRICH1Q6PGQ1 229 aaPredicted RBP9.07□□□□□ -0.96
CSDE1-213ENST00000530784 SYT12Q8IV01 421 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 RNF169Q8NCN4 708 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 OR2I1PQ8NGU4 316 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 ZNF483Q8TF39 744 aaPredicted RBP9.07□□□□□ -0.96
CSDE1-213ENST00000530784 STON2Q8WXE9 905 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 JADE3Q92613 823 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 TFAP2CQ92754 450 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 LDAHQ9H6V9 325 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 GPRC5BQ9NZH0 403 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 SRRDQ9UH36 339 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 EIF2B4Q9UI10 523 aaKnown RBP9.07□□□□□ -0.96
CSDE1-213ENST00000530784 SIK3Q9Y2K2 1263 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 AATKQ6ZMQ8 1374 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 RREB1Q92766 1687 aa9.07□□□□□ -0.96
CSDE1-213ENST00000530784 EVC2Q86UK5 1308 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 OVOS2A0A0G2JMS6 1433 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 OVOS2A0A0J9YW53 1432 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 OVOS2Q6IE36 1432 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 PARP4Q9UKK3 1724 aaKnown RBP9.06□□□□□ -0.96
CSDE1-213ENST00000530784 CXorf49A8MYA2 514 aaPredicted RBP9.06□□□□□ -0.96
CSDE1-213ENST00000530784 GABRDO14764 452 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 PCDHGA12O60330 932 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 ALOX15P16050 662 aaPredicted RBP9.06□□□□□ -0.96
CSDE1-213ENST00000530784 ABHD18Q0P651 414 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 MGAT2Q10469 447 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 KLF10Q13118 480 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 EFCAB12Q6NXP0 572 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 ZNF276Q8N554 614 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 OR10H5Q8NGA6 315 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 DPF2Q92785 391 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 KRTAP4-5Q9BYR2 181 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 PCDHGA9Q9Y5G4 932 aaKnown RBP9.06□□□□□ -0.96
CSDE1-213ENST00000530784 PCDHGA8Q9Y5G5 932 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 PCDHGA7Q9Y5G6 932 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 PCDHGA6Q9Y5G7 932 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 PCDHGA3Q9Y5H0 932 aa9.06□□□□□ -0.96
CSDE1-213ENST00000530784 LRRC37A3O60309 1634 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 TRPM1Q7Z4N2 1603 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 NUP188Q5SRE5 1749 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 PIK3C2AO00443 1686 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 ROCK2O75116 1388 aaKnown RBP9.05□□□□□ -0.96
CSDE1-213ENST00000530784 AHRRA9YTQ3 701 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 ALG1L2C9J202 215 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 CYR61O00622 381 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 TRIM24O15164 1050 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 RECQL4O94761 1208 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 SLPIP03973 132 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 RBP3P10745 1247 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 NR4A1P22736 598 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 MCM7P33993 719 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 SLC6A9P48067 706 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 ACAP2Q15057 778 aa9.05□□□□□ -0.96
CSDE1-213ENST00000530784 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.05□□□□□ -0.96
CSDE1-213ENST00000530784 SLC25A43Q8WUT9 341 aaPredicted RBP9.05□□□□□ -0.96
CSDE1-213ENST00000530784 SENP6Q9GZR1 1112 aaPredicted RBP9.05□□□□□ -0.96
CSDE1-213ENST00000530784 ING1Q9UK53 422 aaPredicted RBP9.05□□□□□ -0.96
CSDE1-213ENST00000530784 CPSF1Q10570 1443 aaKnown RBP9.05□□□□□ -0.96
CSDE1-213ENST00000530784 ENDOD1O94919 500 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 NHLH2Q02577 135 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 SP140Q13342 867 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 PCBP2Q15366 365 aaKnown RBP eCLIP9.04□□□□□ -0.96
CSDE1-213ENST00000530784 AFMIDQ63HM1 303 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 TOM1L2Q6ZVM7 507 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 NRG4Q8WWG1 115 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 SSH1Q8WYL5 1049 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 CLIP3Q96DZ5 547 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 FUBP3Q96I24 572 aaKnown RBP eCLIP9.04□□□□□ -0.96
CSDE1-213ENST00000530784 FAM193BQ96PV7 902 aaPredicted RBP9.04□□□□□ -0.96
CSDE1-213ENST00000530784 ZNF768Q9H5H4 540 aaKnown RBP9.04□□□□□ -0.96
CSDE1-213ENST00000530784 NRDE2Q9H7Z3 1164 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 LANCL2Q9NS86 450 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 TUBD1Q9UJT1 453 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 PNPLA7Q6ZV29 1317 aa9.04□□□□□ -0.96
CSDE1-213ENST00000530784 KLHL33A6NCF5 533 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 FZD9O00144 591 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 PJA2O43164 708 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 NDUFS2O75306 463 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 MAKP20794 623 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 GUCY1A2P33402 732 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 CLRN1P58418 232 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 KCNH5Q8NCM2 988 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 ZFP28Q8NHY6 868 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 SORCS2Q96PQ0 1159 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 PCED1AQ9H1Q7 454 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 AJAP1Q9UKB5 411 aaPredicted RBP9.03□□□□□ -0.96
CSDE1-213ENST00000530784 INTUQ9ULD6 942 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 WDR17Q8IZU2 1322 aa9.03□□□□□ -0.96
CSDE1-213ENST00000530784 PEAK1Q9H792 1746 aa9.02□□□□□ -0.96
CSDE1-213ENST00000530784 SHTN1A0MZ66 631 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms