RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 PRSS29PA6NIE9 313 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 ISM1B1AKI9 464 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 ADAMTS3O15072 1205 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 GPR42O15529 346 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 CDC14BO60729 498 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 PHF2O75151 1096 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 FGF18O76093 207 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 ENDOD1O94919 500 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 IL18RAPO95256 599 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 PTMAP06454 111 aaKnown RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 KITP10721 976 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 HSD3B1P14060 373 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 TYRP14679 529 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 BRAFP15056 766 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 SMARCA1P28370 1054 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 PER3P56645 1201 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 RAC3P60763 192 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 FMO1Q01740 532 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 MEF2AQ02078 507 aaPredicted RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 ICA1Q05084 483 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 PLS1Q14651 629 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 CNGA2Q16280 664 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 MAN2A1Q16706 1144 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 ZXDCQ2QGD7 858 aaPredicted RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 CCDC38Q502W7 563 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 AFMIDQ63HM1 303 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 KRT40Q6A162 431 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 HIBCHQ6NVY1 386 aaPredicted RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 TLDC1Q6P9B6 456 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 PPP1R3BQ86XI6 285 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 SYT12Q8IV01 421 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 LIX1LQ8IVB5 337 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 FTSJ3Q8IY81 847 aaKnown RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 SYTL1Q8IYJ3 562 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 OR5M3Q8NGP4 307 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 IFI44Q8TCB0 444 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 GFM2Q969S9 779 aaKnown RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 TMEM41AQ96HV5 264 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 MRGPRX4Q96LA9 322 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 OR14A2Q96R54 314 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 CDK5RAP1Q96SZ6 601 aaKnown RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 UHRF1Q96T88 793 aaPredicted RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 ISCA1Q9BUE6 129 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 OSBPL6Q9BZF3 934 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 ZHX3Q9H4I2 956 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 AGO4Q9HCK5 861 aaKnown RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 SARS2Q9NP81 518 aaKnown RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 CNNM1Q9NRU3 951 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 FBXO34Q9NWN3 711 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 ABCF2Q9UG63 623 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.92□□□□□ -1.78
CD44-229ENST00000528672 CPA4Q9UI42 421 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 FBXO9Q9UK97 447 aaPredicted RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 LAS1LQ9Y4W2 734 aaKnown RBP3.92□□□□□ -1.78
CD44-229ENST00000528672 PCDHGB2Q9Y5G2 931 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 PCDHA1Q9Y5I3 950 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 SLC30A1Q9Y6M5 507 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 USP19O94966 1318 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 APOL1O14791 398 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 FSBPO95073 299 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 PARP1P09874 1014 aaKnown RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 ALOX15P16050 662 aaPredicted RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 ECHS1P30084 290 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 GUCY1A2P33402 732 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 RPS19P39019 145 aaKnown RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 MAPK9P45984 424 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 SUMO3P55854 103 aaPredicted RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 RAP2BP61225 183 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 FOXL1Q12952 345 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 MTM1Q13496 603 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 BLMHQ13867 455 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 DAG1Q14118 895 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 STARD3Q14849 445 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 RAB39AQ14964 217 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 PUM3Q15397 648 aaKnown RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 SLC4A8Q2Y0W8 1093 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 ARL13BQ3SXY8 428 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 TCTN3Q6NUS6 607 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 GADL1Q6ZQY3 521 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 UNC5BQ8IZJ1 945 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 FUKQ8N0W3 1084 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 CLASRPQ8N2M8 674 aaKnown RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 NME8Q8N427 588 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 ZNF527Q8NB42 609 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 DVL3Q92997 716 aaPredicted RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 SLC7A6OSQ96CW6 309 aaPredicted RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 LTV1Q96GA3 475 aaPredicted RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 SUCLG2Q96I99 432 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 ZC3H10Q96K80 434 aaKnown RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 PHACTR3Q96KR7 559 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 WWC2-AS2Q96NR7 200 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 LMF1Q96S06 567 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 NEU1Q99519 415 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 KRTAP3-1Q9BYR8 98 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 NELFAQ9H3P2 528 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 IL23AQ9NPF7 189 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 SLAMF7Q9NQ25 335 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 MAP3K20Q9NYL2 800 aaKnown RBP3.91□□□□□ -1.78
CD44-229ENST00000528672 CALCOCO1Q9P1Z2 691 aa3.91□□□□□ -1.78
CD44-229ENST00000528672 SWAP70Q9UH65 585 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms