RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CBWD2Q8IUF1 395 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 CCDC65Q8IXS2 484 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 TTC9BQ8N6N2 239 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 C1orf127Q8N9H9 656 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 TDRD5Q8NAT2 981 aaKnown RBP11.56□□□□□ -0.56
CD44-227ENST00000528086 KIAA0895Q8NCT3 520 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 OR10T2Q8NGX3 314 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 PAGE5Q96GU1 130 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 ASB7Q9H672 318 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 SIX4Q9UIU6 781 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 DERAQ9Y315 318 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 C2CD2Q9Y426 696 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 NR2E1Q9Y466 385 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 PCDHB13Q9Y5F0 798 aa11.56□□□□□ -0.56
CD44-227ENST00000528086 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.55□□□□□ -0.56
CD44-227ENST00000528086 ANHXE9PGG2 379 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 TRAPPC3O43617 180 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 NARSO43776 548 aaKnown RBP11.55□□□□□ -0.56
CD44-227ENST00000528086 MOSPD3O75425 235 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 POU2F2P09086 479 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 HNRNPA1P09651 372 aaKnown RBP eCLIP11.55□□□□□ -0.56
CD44-227ENST00000528086 SLFN14P0C7P3 912 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 ATF2P15336 505 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 CCR2P41597 374 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 CDR1P51861 262 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 NDUFA8P51970 172 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 STK4Q13043 487 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 BMT2Q1RMZ1 405 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 CTXN3Q4LDR2 81 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 FAM26FQ5R3K3 315 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 IER5LQ5T953 404 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 PDXDC1Q6P996 788 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 BMP8AQ7Z5Y6 402 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 OR5B17Q8NGF7 314 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 PLEKHO2Q8TD55 490 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 SENP8Q96LD8 212 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 TSPAN18Q96SJ8 248 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 KCNK12Q9HB15 430 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 PDE11AQ9HCR9 933 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 DPP3Q9NY33 737 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 CEP72Q9P209 647 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 EPS15L1Q9UBC2 864 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 CFAP45Q9UL16 551 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 NUB1Q9Y5A7 615 aa11.55□□□□□ -0.56
CD44-227ENST00000528086 DENND4CQ5VZ89 1909 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 EIF3DO15371 548 aaKnown RBP eCLIP11.54□□□□□ -0.56
CD44-227ENST00000528086 EXTL3O43909 919 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 CYP11A1P05108 521 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 LAMP2P13473 410 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 ABCD1P33897 745 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 VCPP55072 806 aaKnown RBP11.54□□□□□ -0.56
CD44-227ENST00000528086 ARPP19P56211 112 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 SIGLEC14Q08ET2 396 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 HTR4Q13639 388 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 ALCAMQ13740 583 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 POSTNQ15063 836 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 CCDC142Q17RM4 750 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 UVSSAQ2YD98 709 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 PPM1LQ5SGD2 360 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 LMBRD2Q68DH5 695 aaPredicted RBP11.54□□□□□ -0.56
CD44-227ENST00000528086 OTOP3Q7RTS5 596 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 LRRTM3Q86VH5 581 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 CD302Q8IX05 232 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 TCEAL8Q8IYN2 117 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 HS6ST3Q8IZP7 471 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 TCEAL4Q96EI5 215 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 SPATA32Q96LK8 384 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 LRRC3Q9BY71 257 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 DNAJC25Q9H1X3 360 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 SLC39A2Q9NP94 309 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 AGPAT3Q9NRZ7 376 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 SORCS3Q9UPU3 1222 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 NME7Q9Y5B8 376 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 NCANO14594 1321 aa11.54□□□□□ -0.56
CD44-227ENST00000528086 CACNA1HO95180 2353 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 PVALEFA0A1B0GWK0 134 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 CLIC2O15247 247 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 HCRTO43612 131 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 TYMPP19971 482 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 KRT85P78386 507 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 ADCY1Q08828 1119 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 PRSS36Q5K4E3 855 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 WSCD1Q658N2 575 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 PARM1Q6UWI2 310 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 GET4Q7L5D6 327 aaPredicted RBP11.53□□□□□ -0.56
CD44-227ENST00000528086 LIMS2Q7Z4I7 341 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 OSTM1Q86WC4 334 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 NPAS3Q8IXF0 933 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 NELFCDQ8IXH7 590 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 PLCD3Q8N3E9 789 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 ATAD1Q8NBU5 361 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 APPL2Q8NEU8 664 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 ZNF516Q92618 1163 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 FGF13Q92913 245 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 FGF14Q92915 247 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 TMEM206Q9H813 350 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 MAGEF1Q9HAY2 307 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 TMLHEQ9NVH6 421 aa11.53□□□□□ -0.56
CD44-227ENST00000528086 RBAKQ9NYW8 714 aaPredicted RBP11.53□□□□□ -0.56
CD44-227ENST00000528086 HSPBP1Q9NZL4 362 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms