RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 RBM12Q9NTZ6 932 aaKnown RBP15.61■□□□□ 0.09
CPSF1-201ENST00000526271 NCDNQ9UBB6 729 aa15.61■□□□□ 0.09
CPSF1-201ENST00000526271 AFF4Q9UHB7 1163 aaKnown RBP15.61■□□□□ 0.09
CPSF1-201ENST00000526271 CHD6Q8TD26 2715 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 SPAG17Q6Q759 2223 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 NPHP3-ACAD11A0A0J9YXS1 232 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 M0QZQ0 153 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 CXCL8P10145 99 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 MAPTP10636 758 aaKnown RBP15.6■□□□□ 0.09
CPSF1-201ENST00000526271 RPL9P32969 192 aaKnown RBP15.6■□□□□ 0.09
CPSF1-201ENST00000526271 TNFSF9P41273 254 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 PDIA5Q14554 519 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 TPGS2Q68CL5 300 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 Q6ZS52 159 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 ZSCAN18Q8TBC5 510 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-201ENST00000526271 ATRIPQ8WXE1 791 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 CHFRQ96EP1 664 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 TRMT61BQ9BVS5 477 aaKnown RBP15.6■□□□□ 0.09
CPSF1-201ENST00000526271 LMAN1LQ9HAT1 526 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 KMT5AQ9NQR1 393 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 YIPF1Q9Y548 306 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 LAMA1P25391 3075 aa15.6■□□□□ 0.09
CPSF1-201ENST00000526271 TTC26A0AVF1 554 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 DCDC2BA2VCK2 349 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 HEPACAM2A8MVW5 462 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 K7ESF4 209 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 HRO43593 1189 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 MYL4P12829 197 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 PSMC3P17980 439 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 LRPAP1P30533 357 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 TRAPPC10P48553 1259 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 YARSP54577 528 aaKnown RBP15.59■□□□□ 0.09
CPSF1-201ENST00000526271 RAD51AP2Q09MP3 1159 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 C8orf34Q49A92 452 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 PDZD4Q76G19 769 aaPredicted RBP15.59■□□□□ 0.09
CPSF1-201ENST00000526271 FAM3CQ92520 227 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 PGLYRP2Q96PD5 576 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.59■□□□□ 0.09
CPSF1-201ENST00000526271 TOPORSQ9NS56 1045 aaPredicted RBP15.59■□□□□ 0.09
CPSF1-201ENST00000526271 SLC38A7Q9NVC3 462 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 PCDHB8Q9UN66 801 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 LIMCH1Q9UPQ0 1083 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.59■□□□□ 0.09
CPSF1-201ENST00000526271 PIAS3Q9Y6X2 628 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 FRYQ5TBA9 3013 aa15.59■□□□□ 0.09
CPSF1-201ENST00000526271 SOAT2O75908 522 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 OAZ2O95190 189 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 CCNE1P24864 410 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 ELF1P32519 619 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 MCM4P33991 863 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 CDR1P51861 262 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 SLC12A3P55017 1021 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 CACNB1Q02641 598 aaPredicted RBP15.58■□□□□ 0.08
CPSF1-201ENST00000526271 MCL1Q07820 350 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 DMP1Q13316 513 aaPredicted RBP15.58■□□□□ 0.08
CPSF1-201ENST00000526271 SAFBQ15424 915 aaKnown RBP eCLIP15.58■□□□□ 0.08
CPSF1-201ENST00000526271 ARSHQ5FYA8 562 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 HYIQ5T013 277 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 ZNF280DQ6N043 979 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 GAREM2Q75VX8 874 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 MFSD6LQ8IWD5 586 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 SPIRE2Q8WWL2 714 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 LLPHQ9BRT6 129 aaKnown RBP15.58■□□□□ 0.08
CPSF1-201ENST00000526271 ANKFY1Q9P2R3 1169 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 GREB1Q4ZG55 1949 aa15.58■□□□□ 0.08
CPSF1-201ENST00000526271 CEP295Q9C0D2 2601 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 MYO16Q9Y6X6 1858 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 A0A1W2PRU2 124 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 H7C4K7 107 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 TOM1L1O75674 476 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 GUCY2CP25092 1073 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 FCHO2Q0JRZ9 810 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 SPEM2Q0P670 501 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 DUSP4Q13115 394 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 NOLC1Q14978 699 aaKnown RBP eCLIP15.57■□□□□ 0.08
CPSF1-201ENST00000526271 ENOX2Q16206 610 aaKnown RBP15.57■□□□□ 0.08
CPSF1-201ENST00000526271 SLC39A4Q6P5W5 647 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 PKN3Q6P5Z2 889 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 ATAD1Q8NBU5 361 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 IRF7Q92985 503 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 BORCS6Q96GS4 357 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 ZFYVE19Q96K21 471 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 PLIN2Q99541 437 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 DNM3Q9UQ16 869 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 SLC27A5Q9Y2P5 690 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 NUB1Q9Y5A7 615 aa15.57■□□□□ 0.08
CPSF1-201ENST00000526271 MTMR11A4FU01 709 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 SLC38A8A6NNN8 435 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 LACTBL1A8MY62 500 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 CHURC1-FNTBB4DL54 471 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 MAN2B1O00754 1011 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 ZNF197O14709 1029 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 NCAM2O15394 837 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 PRAMEF12O95522 483 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 ADRB2P07550 413 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 PLS3P13797 630 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 FNTBP49356 437 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 SCARA3Q6AZY7 606 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 CENPPQ6IPU0 288 aa15.56■□□□□ 0.08
CPSF1-201ENST00000526271 SYT2Q8N9I0 419 aaPredicted RBP15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms