RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 RINT1Q6NUQ1 792 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 TXNDC11Q6PKC3 985 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 USP37Q86T82 979 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 MAP4K3Q8IVH8 894 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 ARID3BQ8IVW6 561 aaPredicted RBP7.18□□□□□ -1.26
CD44-221ENST00000526000 MFSD6LQ8IWD5 586 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 ZNF687Q8N1G0 1237 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 TTC9BQ8N6N2 239 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 GPR161Q8N6U8 529 aaKnown RBP7.18□□□□□ -1.26
CD44-221ENST00000526000 CELF5Q8N6W0 485 aaKnown RBP7.18□□□□□ -1.26
CD44-221ENST00000526000 TTC16Q8NEE8 873 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 APPL2Q8NEU8 664 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 FAM200AQ8TCP9 573 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 GIPC2Q8TF65 315 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 NELL1Q92832 810 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 KIF12Q96FN5 646 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 SUSD3Q96L08 255 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 SMG9Q9H0W8 520 aaKnown RBP7.18□□□□□ -1.26
CD44-221ENST00000526000 CRISPLD1Q9H336 500 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 ATXN3LQ9H3M9 355 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 SMOC1Q9H4F8 434 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 PTPRHQ9HD43 1115 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 PRMT8Q9NR22 394 aaPredicted RBP7.18□□□□□ -1.26
CD44-221ENST00000526000 ASAH2Q9NR71 780 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 SEMA4GQ9NTN9 838 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 SLC38A7Q9NVC3 462 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 GTSE1Q9NYZ3 720 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 AFF4Q9UHB7 1163 aaKnown RBP7.18□□□□□ -1.26
CD44-221ENST00000526000 DNM3Q9UQ16 869 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 PCDHB6Q9Y5E3 794 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 TDRD15B5MCY1 1934 aaKnown RBP7.18□□□□□ -1.26
CD44-221ENST00000526000 MTCL1Q9Y4B5 1905 aaKnown RBP7.18□□□□□ -1.26
CD44-221ENST00000526000 NOTCH4Q99466 2003 aa7.18□□□□□ -1.26
CD44-221ENST00000526000 CACNA1BQ00975 2339 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 LACTBL1A8MY62 500 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 ABLIM1O14639 778 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 EXTL3O43909 919 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 POU2F2P09086 479 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 CXCL8P10145 99 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 MCF2P10911 925 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 TDGF1P13385 188 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 KCNE1P15382 129 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 SDHBP21912 280 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 TNFSF9P41273 254 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 MAGEA9P43362 315 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 ALDH1A3P47895 512 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 TOB1P50616 345 aaPredicted RBP7.17□□□□□ -1.26
CD44-221ENST00000526000 CCR3P51677 355 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 EPHB3P54753 998 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 NRLP54845 237 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 CYP4F8P98187 520 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 STRN3Q13033 797 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 MAPK7Q13164 816 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 RABEP1Q15276 862 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 SF3A2Q15428 464 aaKnown RBP7.17□□□□□ -1.26
CD44-221ENST00000526000 GPR158Q5T848 1215 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 TPGS2Q68CL5 300 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 HAUS3Q68CZ6 603 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 MPZL3Q6UWV2 235 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 C1orf186Q6ZWK4 172 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 RTL10Q7L3V2 364 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.17□□□□□ -1.26
CD44-221ENST00000526000 DNAJB7Q7Z6W7 309 aaPredicted RBP7.17□□□□□ -1.26
CD44-221ENST00000526000 FAM184AQ8NB25 1140 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 DNASE1L2Q92874 299 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 BICD1Q96G01 975 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 RTKNQ9BST9 563 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 HAPLN2Q9GZV7 340 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 DNAJC25Q9H1X3 360 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 ARRDC1-AS1Q9H2J1 176 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 TMEM134Q9H6X4 195 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 AVENQ9NQS1 362 aaPredicted RBP7.17□□□□□ -1.26
CD44-221ENST00000526000 NOL7Q9UMY1 257 aaKnown RBP7.17□□□□□ -1.26
CD44-221ENST00000526000 PCDHB8Q9UN66 801 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 YIPF1Q9Y548 306 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 ZMYM2Q9UBW7 1377 aa7.17□□□□□ -1.26
CD44-221ENST00000526000 CACNA1GO43497 2377 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 SPECC1L-ADORA2AF8WAN1 911 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 CLDN3O15551 220 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 RETP07949 1114 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 PROZP22891 400 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 U2AF2P26368 475 aaKnown RBP eCLIP7.16□□□□□ -1.26
CD44-221ENST00000526000 GABRR2P28476 465 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 FXR2P51116 673 aaKnown RBP eCLIP7.16□□□□□ -1.26
CD44-221ENST00000526000 YWHAHQ04917 246 aaPredicted RBP7.16□□□□□ -1.26
CD44-221ENST00000526000 PPP2R5DQ14738 602 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 ST3GAL2Q16842 350 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 KRT79Q5XKE5 535 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 MCTP1Q6DN14 999 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 LAIR1Q6GTX8 287 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 CENPPQ6IPU0 288 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 ARMCX5Q6P1M9 558 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 PKN3Q6P5Z2 889 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 PRR23CQ6ZRP0 262 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 GAREM2Q75VX8 874 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 SPEM1Q8N4L4 309 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 FAM160A2Q8N612 972 aaPredicted RBP7.16□□□□□ -1.26
CD44-221ENST00000526000 STKLD1Q8NE28 680 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 FBXO18Q8NFZ0 1043 aa7.16□□□□□ -1.26
CD44-221ENST00000526000 DEPDC1BQ8WUY9 529 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms