RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 B5MCH6 92 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 NPIPB6E9PJ23 425 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 GRM6O15303 877 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 HOXA3O43365 443 aaPredicted RBP5.62□□□□□ -1.51
CD44-220ENST00000525688 B4GALT3O60512 393 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 B4GALT4O60513 344 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 MATN4O95460 622 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 CNOT4O95628 575 aaKnown RBP5.62□□□□□ -1.51
CD44-220ENST00000525688 SNRPA1P09661 255 aaKnown RBP5.62□□□□□ -1.51
CD44-220ENST00000525688 RAC3P60763 192 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 CREMQ03060 361 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 RIN1Q13671 783 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 SIM2Q14190 667 aaPredicted RBP5.62□□□□□ -1.51
CD44-220ENST00000525688 DGKKQ5KSL6 1271 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 PLEKHH3Q7Z736 793 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 SHCBP1Q8NEM2 672 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 NLGN4YQ8NFZ3 816 aaPredicted RBP5.62□□□□□ -1.51
CD44-220ENST00000525688 BRI3BPQ8WY22 251 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 MRI1Q9BV20 369 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 COLEC11Q9BWP8 271 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 TRIM54Q9BYV2 358 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 AGO3Q9H9G7 860 aaKnown RBP5.62□□□□□ -1.51
CD44-220ENST00000525688 SEC61A2Q9H9S3 476 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 AS3MTQ9HBK9 375 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 PTPRHQ9HD43 1115 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 TRMT13Q9NUP7 481 aaKnown RBP5.62□□□□□ -1.51
CD44-220ENST00000525688 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.62□□□□□ -1.51
CD44-220ENST00000525688 NCDNQ9UBB6 729 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 CPA4Q9UI42 421 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 OGDHLQ9ULD0 1010 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 MED16Q9Y2X0 877 aa5.62□□□□□ -1.51
CD44-220ENST00000525688 PRSS29PA6NIE9 313 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 TCERG1O14776 1098 aaKnown RBP5.61□□□□□ -1.51
CD44-220ENST00000525688 KPNA5O15131 536 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 SLC43A1O75387 559 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 SBK3P0C264 359 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 RAP2AP10114 183 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 ATP5JP18859 108 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 TNFSF4P23510 183 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 RAP1GAPP47736 663 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 SUMO3P55854 103 aaPredicted RBP5.61□□□□□ -1.51
CD44-220ENST00000525688 SOX8P57073 446 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 CNGB1Q14028 1251 aaPredicted RBP5.61□□□□□ -1.51
CD44-220ENST00000525688 KIF22Q14807 665 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 FHOD3Q2V2M9 1422 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 CCDC93Q567U6 631 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 TCERG1LQ5VWI1 586 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 IZUMO3Q5VZ72 239 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 OGFOD2Q6N063 350 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 BORAQ6PGQ7 559 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 C1orf228Q6PIY5 440 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 GET4Q7L5D6 327 aaPredicted RBP5.61□□□□□ -1.51
CD44-220ENST00000525688 SESTD1Q86VW0 696 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 GPR135Q8IZ08 494 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 CELF5Q8N6W0 485 aaKnown RBP5.61□□□□□ -1.51
CD44-220ENST00000525688 RNF152Q8N8N0 203 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 SLC35B2Q8TB61 432 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 NMD3Q96D46 503 aaKnown RBP5.61□□□□□ -1.51
CD44-220ENST00000525688 NEIL1Q96FI4 390 aaPredicted RBP5.61□□□□□ -1.51
CD44-220ENST00000525688 MYOCQ99972 504 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 TCF25Q9BQ70 676 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 NDC1Q9BTX1 674 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 C1orf43Q9BWL3 253 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 NELFAQ9H3P2 528 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 CORO2BQ9UQ03 480 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 RUVBL1Q9Y265 456 aaKnown RBP5.61□□□□□ -1.51
CD44-220ENST00000525688 FRMD4BQ9Y2L6 1034 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 SNX13Q9Y5W8 968 aa5.61□□□□□ -1.51
CD44-220ENST00000525688 KIF13AQ9H1H9 1805 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 ZCCHC11Q5TAX3 1644 aaKnown RBP5.6□□□□□ -1.51
CD44-220ENST00000525688 DIP2BQ9P265 1576 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 ARHGAP35Q9NRY4 1499 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 TBKBP1A7MCY6 615 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 TCEA3O75764 348 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 IL18RAPO95256 599 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 AHSGP02765 367 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 BRAFP15056 766 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 HDCP19113 662 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 CR2P20023 1033 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 CASP2P42575 452 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 KCNC1P48547 511 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 CLRN1P58418 232 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 CHAF1AQ13111 956 aaPredicted RBP5.6□□□□□ -1.51
CD44-220ENST00000525688 DAG1Q14118 895 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 BMT2Q1RMZ1 405 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 VMACQ2NL98 169 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 ZNF648Q5T619 568 aaPredicted RBP5.6□□□□□ -1.51
CD44-220ENST00000525688 CCDC70Q6NSX1 233 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 ERAP2Q6P179 960 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 DOK3Q7L591 496 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 GPRIN1Q7Z2K8 1008 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 PDSS2Q86YH6 399 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 CREBRFQ8IUR6 639 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 LGI4Q8N135 537 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 ARFGAP3Q9NP61 516 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 PNPLA8Q9NP80 782 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 STK32BQ9NY57 414 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 JKAMPQ9P055 326 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 CFAP97Q9P2B7 532 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 CPNE7Q9UBL6 633 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms